Variant report

Variant	rs11236987
Chromosome Location	chr11:76577471-76577472
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76571772..76574183-chr11:76576104..76580771,5	MCF-7	breast:
2	chr11:76570667..76575236-chr11:76577091..76581916,10	K562	blood:
3	chr11:76576601..76578189-chr11:76583697..76586009,2	MCF-7	breast:
4	chr11:76573736..76576142-chr11:76577044..76578811,2	K562	blood:

Variant related genes	Relation type
ENSG00000078124	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10899304	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899306	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899326	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10899331	0.83[ASN][1000 genomes]
rs10899334	0.81[ASN][1000 genomes]
rs10899339	0.82[CEU][hapmap]
rs11236967	0.80[EUR][1000 genomes]
rs11236980	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236981	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11237010	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11237013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11237017	0.85[EUR][1000 genomes]
rs11237048	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11237053	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12222735	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12222780	0.83[ASN][1000 genomes]
rs12226468	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1561647	0.90[CHB][hapmap]
rs17135325	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs58026572	0.80[EUR][1000 genomes]
rs58738182	0.81[EUR][1000 genomes]
rs60495644	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7129920	0.81[EUR][1000 genomes]
rs72639138	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72639139	0.83[ASN][1000 genomes]
rs72639140	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518920	chr11:76573016-76637651	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76572800-76579600	Weak transcription	Ovary	ovary
2	chr11:76572800-76596400	Weak transcription	Small Intestine	intestine
3	chr11:76573000-76578200	Weak transcription	Aorta	Aorta
4	chr11:76573000-76578800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:76573000-76579200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr11:76573000-76579400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr11:76573000-76579600	Weak transcription	Lung	lung
8	chr11:76573000-76579800	Weak transcription	Gastric	stomach
9	chr11:76573000-76581800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr11:76573000-76582000	Weak transcription	HSMM	muscle
11	chr11:76573000-76582200	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr11:76573000-76583000	Weak transcription	Fetal Stomach	stomach
13	chr11:76573000-76583600	Weak transcription	Esophagus	oesophagus
14	chr11:76573200-76577800	Weak transcription	Fetal Kidney	kidney
15	chr11:76573200-76578200	Weak transcription	Spleen	Spleen
16	chr11:76573200-76579400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:76573200-76580000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr11:76573200-76581400	Weak transcription	Fetal Brain Male	brain
19	chr11:76573200-76581800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:76573200-76582000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:76573200-76583000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:76573200-76583200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr11:76573200-76583600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr11:76573200-76591600	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr11:76573200-76596600	Weak transcription	Right Ventricle	heart
26	chr11:76573200-76600400	Weak transcription	Primary T cells from cord blood	blood
27	chr11:76573200-76601400	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr11:76573400-76579000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr11:76573400-76579000	Weak transcription	Fetal Brain Female	brain
30	chr11:76573400-76579400	Weak transcription	Fetal Heart	heart
31	chr11:76573400-76579600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:76573400-76579600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr11:76573400-76579600	Weak transcription	Brain Germinal Matrix	brain
34	chr11:76573400-76579600	Weak transcription	Colonic Mucosa	Colon
35	chr11:76573400-76579600	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr11:76573400-76581200	Weak transcription	Fetal Lung	lung
37	chr11:76573400-76581400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr11:76573400-76582200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr11:76573400-76582200	Weak transcription	Liver	Liver
40	chr11:76573400-76582600	Weak transcription	Fetal Intestine Large	intestine
41	chr11:76573400-76591400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr11:76573600-76578800	Weak transcription	GM12878-XiMat	blood
43	chr11:76573600-76579000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr11:76573600-76579400	Weak transcription	A549	lung
45	chr11:76573600-76579600	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr11:76573600-76581000	Weak transcription	Fetal Intestine Small	intestine
47	chr11:76573600-76587600	Weak transcription	Hela-S3	cervix
48	chr11:76573600-76588600	Weak transcription	HUVEC	blood vessel
49	chr11:76573600-76591000	Weak transcription	NHDF-Ad	bronchial
50	chr11:76573600-76591400	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links