Variant report

Variant	rs11237048
Chromosome Location	chr11:76693636-76693637
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76691402..76695270-chr11:76696975..76699875,3	K562	blood:
2	chr11:76691341..76694336-chr11:76696975..76699945,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10899326	0.83[ASN][1000 genomes]
rs10899331	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10899334	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10899339	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11236980	0.92[AFR][1000 genomes]
rs11236987	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11237013	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11237053	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11237054	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11237056	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12222735	0.90[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12222780	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12224200	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1561647	0.86[CHB][hapmap]
rs17135325	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60495644	0.83[ASN][1000 genomes]
rs7121184	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72639138	0.83[ASN][1000 genomes]
rs72639139	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72639140	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72639142	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72639143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519700	chr11:76637651-76709407	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1042924	chr11:76659477-76709407	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1040833	chr11:76667160-76709407	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv396	chr11:76670116-76702745	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1802222	chr11:76683305-76709407	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76660000-76710800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr11:76666800-76695400	Weak transcription	NHEK	skin
3	chr11:76672200-76697800	Weak transcription	Left Ventricle	heart
4	chr11:76672400-76696000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:76674400-76696000	Weak transcription	Small Intestine	intestine
6	chr11:76675000-76721800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:76675000-76725600	Weak transcription	A549	lung
8	chr11:76675000-76729600	Weak transcription	Brain Angular Gyrus	brain
9	chr11:76683000-76736400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr11:76683200-76729200	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:76683600-76720400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:76683600-76728000	Weak transcription	Brain Anterior Caudate	brain
13	chr11:76684400-76699400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr11:76688400-76695600	Weak transcription	HMEC	breast
15	chr11:76688600-76695600	Weak transcription	Stomach Mucosa	stomach
16	chr11:76688600-76710800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:76689200-76696000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr11:76689200-76734600	Weak transcription	Liver	Liver
19	chr11:76689400-76700600	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr11:76689400-76700800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:76689600-76701200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr11:76689600-76717800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:76689600-76737000	Weak transcription	Pancreas	Pancrea
24	chr11:76689800-76694800	Weak transcription	Fetal Brain Female	brain
25	chr11:76689800-76698000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr11:76689800-76699000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:76689800-76699400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:76689800-76704800	Weak transcription	Primary B cells from peripheral blood	blood
29	chr11:76689800-76708400	Weak transcription	Primary T cells from cord blood	blood
30	chr11:76689800-76731400	Weak transcription	Ovary	ovary
31	chr11:76690000-76699800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr11:76690000-76706000	Weak transcription	Gastric	stomach
33	chr11:76690000-76709200	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr11:76690000-76718000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:76690000-76718600	Weak transcription	Primary B cells from cord blood	blood
36	chr11:76690000-76722000	Weak transcription	Aorta	Aorta
37	chr11:76690000-76723800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr11:76690000-76735800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr11:76690200-76693800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr11:76690200-76695400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:76690200-76695800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr11:76690200-76696000	Weak transcription	Adipose Nuclei	Adipose
43	chr11:76690200-76696200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr11:76690200-76696200	Weak transcription	Esophagus	oesophagus
45	chr11:76690200-76698400	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr11:76690200-76704000	Weak transcription	Lung	lung
47	chr11:76690200-76704800	Weak transcription	Fetal Stomach	stomach
48	chr11:76690200-76709200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr11:76690200-76710000	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr11:76690200-76710600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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