Variant report

Variant	rs11237054
Chromosome Location	chr11:76711124-76711125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76704521..76706284-chr11:76709613..76712026,2	K562	blood:

Variant related genes	Relation type
ENSG00000078124	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10899326	0.82[ASN][1000 genomes]
rs10899331	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10899334	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10899339	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11237048	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11237053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11237056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12222780	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12224200	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17135325	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60495644	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7121184	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72639138	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72639139	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72639140	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72639142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72639143	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76675000-76721800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr11:76675000-76725600	Weak transcription	A549	lung
3	chr11:76675000-76729600	Weak transcription	Brain Angular Gyrus	brain
4	chr11:76683000-76736400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:76683200-76729200	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:76683600-76720400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:76683600-76728000	Weak transcription	Brain Anterior Caudate	brain
8	chr11:76689200-76734600	Weak transcription	Liver	Liver
9	chr11:76689600-76717800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:76689600-76737000	Weak transcription	Pancreas	Pancrea
11	chr11:76689800-76731400	Weak transcription	Ovary	ovary
12	chr11:76690000-76718000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:76690000-76718600	Weak transcription	Primary B cells from cord blood	blood
14	chr11:76690000-76722000	Weak transcription	Aorta	Aorta
15	chr11:76690000-76723800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:76690000-76735800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr11:76690200-76722000	Weak transcription	Spleen	Spleen
18	chr11:76690200-76729000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr11:76690200-76736800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr11:76690400-76717200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr11:76690400-76734600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr11:76692600-76713000	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr11:76693800-76734800	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr11:76694000-76738600	Weak transcription	HSMMtube	muscle
25	chr11:76696000-76711200	Strong transcription	Adipose Nuclei	Adipose
26	chr11:76696200-76738000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr11:76696400-76714800	Weak transcription	NHEK	skin
28	chr11:76696400-76726600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr11:76696600-76722200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:76696600-76725600	Weak transcription	Small Intestine	intestine
31	chr11:76696600-76726800	Weak transcription	Esophagus	oesophagus
32	chr11:76697000-76726600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr11:76698000-76726600	Weak transcription	NHDF-Ad	bronchial
34	chr11:76699800-76731200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr11:76700000-76729800	Weak transcription	Left Ventricle	heart
36	chr11:76701200-76738400	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr11:76702600-76736000	Weak transcription	Brain Substantia Nigra	brain
38	chr11:76703600-76717200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr11:76704200-76720200	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr11:76704400-76712600	Weak transcription	Duodenum Mucosa	Duodenum
41	chr11:76705200-76715000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:76705200-76718800	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr11:76705400-76720200	Weak transcription	Lung	lung
44	chr11:76705600-76720000	Weak transcription	Fetal Stomach	stomach
45	chr11:76705600-76735600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr11:76707200-76730800	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr11:76707600-76730400	Weak transcription	Fetal Brain Male	brain
48	chr11:76708200-76711200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr11:76708600-76712400	Weak transcription	Fetal Intestine Small	intestine
50	chr11:76709400-76720000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links