Variant report

Variant	rs72639138
Chromosome Location	chr11:76650357-76650358
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10899304	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10899306	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10899326	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899331	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899334	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10899339	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11236980	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11236981	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11236987	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11236992	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11237013	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11237017	0.82[AMR][1000 genomes]
rs11237048	0.83[ASN][1000 genomes]
rs11237053	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11237054	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11237056	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12222735	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12222780	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12226468	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60495644	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7121184	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72639139	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72639140	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72639142	0.81[ASN][1000 genomes]
rs72639143	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519700	chr11:76637651-76709407	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76631400-76655000	Weak transcription	Primary B cells from cord blood	blood
2	chr11:76631400-76688400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:76631600-76657000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:76631600-76670200	Weak transcription	Left Ventricle	heart
5	chr11:76631600-76671600	Weak transcription	Ovary	ovary
6	chr11:76638800-76651600	Weak transcription	Colonic Mucosa	Colon
7	chr11:76644000-76666400	Weak transcription	NHEK	skin
8	chr11:76644200-76653000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr11:76645800-76683800	Weak transcription	Esophagus	oesophagus
10	chr11:76646000-76656600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr11:76646200-76670600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr11:76646600-76651000	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr11:76646600-76655000	Weak transcription	Primary T cells from cord blood	blood
14	chr11:76646600-76688000	Weak transcription	HMEC	breast
15	chr11:76646800-76656600	Weak transcription	Lung	lung
16	chr11:76647000-76670200	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr11:76647200-76651400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr11:76647200-76651600	Weak transcription	Brain Angular Gyrus	brain
19	chr11:76647200-76651800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr11:76647200-76651800	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr11:76647200-76652600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr11:76647200-76653200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:76647200-76653600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr11:76647200-76654200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr11:76647200-76655200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr11:76647200-76655200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr11:76647200-76655400	Weak transcription	Primary hematopoietic stem cells	blood
28	chr11:76647200-76655400	Weak transcription	Duodenum Mucosa	Duodenum
29	chr11:76647200-76671600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:76647200-76673800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:76647200-76674800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr11:76647400-76651800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:76647400-76653000	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr11:76647400-76670000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr11:76647600-76651400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr11:76648400-76671600	Weak transcription	Spleen	Spleen
37	chr11:76649000-76650600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr11:76649400-76650400	Weak transcription	HepG2	liver
39	chr11:76649600-76650400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:76649600-76653000	Weak transcription	Fetal Intestine Small	intestine
41	chr11:76649600-76656400	Weak transcription	Fetal Stomach	stomach
42	chr11:76649600-76669600	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr11:76649600-76672000	Weak transcription	Aorta	Aorta
44	chr11:76649800-76650400	Weak transcription	Brain Substantia Nigra	brain
45	chr11:76649800-76650400	Weak transcription	Placenta	Placenta
46	chr11:76649800-76650600	Enhancers	A549	lung
47	chr11:76649800-76650800	Enhancers	HUVEC	blood vessel
48	chr11:76649800-76655200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr11:76650000-76669600	Weak transcription	Adipose Nuclei	Adipose
50	chr11:76650200-76650600	Enhancers	Stomach Mucosa	stomach

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