Variant report

Variant	rs11236980
Chromosome Location	chr11:76574019-76574020
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76518255..76520298-chr11:76572077..76574099,2	MCF-7	breast:
2	chr11:76573371..76575582-chr11:76628469..76631182,2	MCF-7	breast:
3	chr11:76573736..76576142-chr11:76577044..76578811,2	K562	blood:
4	chr11:76572318..76575156-chr11:76600227..76602502,2	K562	blood:
5	chr11:76478547..76482353-chr11:76570414..76574348,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254632	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10899304	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10899306	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10899326	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10899331	0.83[ASN][1000 genomes]
rs10899334	0.81[ASN][1000 genomes]
rs11236967	0.80[EUR][1000 genomes]
rs11236981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236987	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236992	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11237010	0.81[ASN][1000 genomes]
rs11237013	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11237017	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11237048	0.92[AFR][1000 genomes]
rs12222735	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12222780	0.83[ASN][1000 genomes]
rs12226468	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58026572	0.80[EUR][1000 genomes]
rs58738182	0.81[EUR][1000 genomes]
rs60495644	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7129920	0.81[EUR][1000 genomes]
rs72639138	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72639139	0.83[ASN][1000 genomes]
rs72639140	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs72639143	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518920	chr11:76573016-76637651	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76572600-76575200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
2	chr11:76572800-76574600	Enhancers	Primary B cells from peripheral blood	blood
3	chr11:76572800-76579600	Weak transcription	Ovary	ovary
4	chr11:76572800-76596400	Weak transcription	Small Intestine	intestine
5	chr11:76573000-76574200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr11:76573000-76574800	Enhancers	Primary hematopoietic stem cells	blood
7	chr11:76573000-76575200	Enhancers	Primary B cells from cord blood	blood
8	chr11:76573000-76575200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:76573000-76578200	Weak transcription	Aorta	Aorta
10	chr11:76573000-76578800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:76573000-76579200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr11:76573000-76579400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:76573000-76579600	Weak transcription	Lung	lung
14	chr11:76573000-76579800	Weak transcription	Gastric	stomach
15	chr11:76573000-76581800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr11:76573000-76582000	Weak transcription	HSMM	muscle
17	chr11:76573000-76582200	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr11:76573000-76583000	Weak transcription	Fetal Stomach	stomach
19	chr11:76573000-76583600	Weak transcription	Esophagus	oesophagus
20	chr11:76573200-76574200	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr11:76573200-76574200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr11:76573200-76574600	Enhancers	Placenta	Placenta
23	chr11:76573200-76574600	Enhancers	Dnd41	blood
24	chr11:76573200-76575000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr11:76573200-76575400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr11:76573200-76575800	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr11:76573200-76577800	Weak transcription	Fetal Kidney	kidney
28	chr11:76573200-76578200	Weak transcription	Spleen	Spleen
29	chr11:76573200-76579400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:76573200-76580000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr11:76573200-76581400	Weak transcription	Fetal Brain Male	brain
32	chr11:76573200-76581800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr11:76573200-76582000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr11:76573200-76583000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr11:76573200-76583200	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr11:76573200-76583600	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr11:76573200-76591600	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr11:76573200-76596600	Weak transcription	Right Ventricle	heart
39	chr11:76573200-76600400	Weak transcription	Primary T cells from cord blood	blood
40	chr11:76573200-76601400	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr11:76573400-76574200	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr11:76573400-76574600	Enhancers	Brain Cingulate Gyrus	brain
43	chr11:76573400-76574600	Enhancers	K562	blood
44	chr11:76573400-76575400	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr11:76573400-76575400	Enhancers	Adipose Nuclei	Adipose
46	chr11:76573400-76575400	Enhancers	Brain Substantia Nigra	brain
47	chr11:76573400-76579000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr11:76573400-76579000	Weak transcription	Fetal Brain Female	brain
49	chr11:76573400-76579400	Weak transcription	Fetal Heart	heart
50	chr11:76573400-76579600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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