Variant report

Variant	rs10899789
Chromosome Location	chr10:43817859-43817860
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SIN3A	chr10:43817812-43818765	H1-hESC	embryonic stem cell:	n/a	chr10:43818572-43818585

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:43816783..43818713-chr10:43838155..43841036,2	MCF-7	breast:
2	chr10:43812264..43813765-chr10:43817090..43818832,2	K562	blood:

Variant related genes	Relation type
ENSG00000224265	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10899790	0.92[ASN][1000 genomes]
rs11238514	0.92[ASN][1000 genomes]
rs7087184	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7909500	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv916378	chr10:43622151-43868356	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1043661	chr10:43626619-43890162	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540574	chr10:43626619-43890162	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1035873	chr10:43721143-43873664	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv466882	chr10:43721481-43849358	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv550697	chr10:43721481-43849358	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv1044422	chr10:43731521-43860307	Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43805000-43818000	Weak transcription	Right Atrium	heart
2	chr10:43812800-43818000	Weak transcription	Spleen	Spleen
3	chr10:43813200-43818000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr10:43813200-43818000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:43814800-43818000	Weak transcription	A549	lung
6	chr10:43815200-43818000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:43815200-43818000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:43815400-43818000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:43816000-43818000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:43817000-43818000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:43817000-43818600	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr10:43817200-43819000	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr10:43817600-43818800	Flanking Active TSS	Duodenum Mucosa	Duodenum
14	chr10:43817800-43818000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr10:43817800-43818000	Flanking Active TSS	H1 Cell Line	embryonic stem cell
16	chr10:43817800-43818000	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr10:43817800-43818000	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:43817800-43818000	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr10:43817800-43818000	Enhancers	Primary hematopoietic stem cells	blood
20	chr10:43817800-43818000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
21	chr10:43817800-43818000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr10:43817800-43818000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr10:43817800-43818000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr10:43817800-43818000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr10:43817800-43818000	Enhancers	Brain Germinal Matrix	brain
26	chr10:43817800-43818000	Enhancers	Fetal Intestine Large	intestine
27	chr10:43817800-43818000	Enhancers	Fetal Intestine Small	intestine
28	chr10:43817800-43818000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
29	chr10:43817800-43818000	Enhancers	Ovary	ovary
30	chr10:43817800-43818000	Enhancers	Pancreas	Pancrea
31	chr10:43817800-43818000	Active TSS	Rectal Mucosa Donor 31	rectum
32	chr10:43817800-43818000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
33	chr10:43817800-43818200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:43817800-43818200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
35	chr10:43817800-43818200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
36	chr10:43817800-43818200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
37	chr10:43817800-43818200	Flanking Active TSS	Brain Angular Gyrus	brain
38	chr10:43817800-43818200	Flanking Active TSS	Brain Anterior Caudate	brain
39	chr10:43817800-43818200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:43817800-43818200	Bivalent Enhancer	Fetal Muscle Leg	muscle
41	chr10:43817800-43818200	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
42	chr10:43817800-43818400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
43	chr10:43817800-43818400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
44	chr10:43817800-43818400	Enhancers	Fetal Lung	lung
45	chr10:43817800-43818600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr10:43817800-43818600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr10:43817800-43818600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr10:43817800-43818600	Active TSS	Brain Hippocampus Middle	brain
49	chr10:43817800-43818600	Active TSS	Brain Inferior Temporal Lobe	brain
50	chr10:43817800-43818600	Active TSS	Colonic Mucosa	Colon

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