Variant report

Variant	rs7087184
Chromosome Location	chr10:43828231-43828232
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10409	0.90[JPT][hapmap]
rs10899789	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10899790	0.98[ASN][1000 genomes]
rs10899794	0.84[JPT][hapmap]
rs10899795	0.88[CEU][hapmap]
rs10899803	0.90[JPT][hapmap]
rs10899807	0.90[JPT][hapmap]
rs11238514	0.98[ASN][1000 genomes]
rs11238532	0.90[JPT][hapmap]
rs11238536	0.90[JPT][hapmap]
rs11238553	0.90[JPT][hapmap]
rs12220230	0.90[JPT][hapmap]
rs12250140	0.90[JPT][hapmap]
rs13376803	0.89[JPT][hapmap]
rs7909500	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv916378	chr10:43622151-43868356	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1043661	chr10:43626619-43890162	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540574	chr10:43626619-43890162	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1035873	chr10:43721143-43873664	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv466882	chr10:43721481-43849358	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv550697	chr10:43721481-43849358	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv1044422	chr10:43731521-43860307	Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7087184	RAB27B	trans	cerebellum	SCAN
rs7087184	ANUBL1	cis	parietal	SCAN

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43818600-43828400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:43819000-43828400	Weak transcription	Lung	lung
3	chr10:43825600-43832000	Weak transcription	Fetal Intestine Large	intestine
4	chr10:43825600-43832200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr10:43825600-43832200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:43826200-43828800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr10:43826200-43828800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr10:43826200-43829000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr10:43826200-43829400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr10:43826200-43829400	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr10:43826200-43829800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:43826400-43829600	Enhancers	Primary T cells fromperipheralblood	blood
13	chr10:43826400-43831600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:43826400-43832200	Weak transcription	HepG2	liver
15	chr10:43826600-43828800	Enhancers	Primary B cells from cord blood	blood
16	chr10:43826800-43829000	Enhancers	A549	lung
17	chr10:43827000-43828800	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr10:43827200-43828600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr10:43827200-43828600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
20	chr10:43827200-43828800	Enhancers	Primary T cells from cord blood	blood
21	chr10:43827200-43828800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr10:43827200-43828800	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr10:43827200-43828800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr10:43827200-43828800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:43827200-43829600	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr10:43827400-43828400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr10:43827400-43828600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
28	chr10:43827400-43828600	Enhancers	Primary hematopoietic stem cells	blood
29	chr10:43827400-43828600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr10:43827600-43828400	Enhancers	Thymus	Thymus
31	chr10:43827800-43828800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chr10:43828000-43828400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr10:43828200-43828400	Enhancers	Right Atrium	heart
34	chr10:43828200-43828800	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr10:43828200-43828800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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