Variant report

Variant	rs10899795
Chromosome Location	chr10:43869097-43869098
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr10:43869018-43869695	HEK293-T-REx	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:43867647..43875264-chr10:43900659..43906151,11	MCF-7	breast:
2	chr10:43868700..43874062-chr10:43890607..43893448,6	MCF-7	breast:
3	chr10:43868968..43875759-chr10:43890269..43893335,11	MCF-7	breast:

Variant related genes	Relation type
FXYD4	TF binding region
ENSG00000169813	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10793431	0.89[CEU][hapmap];0.93[GIH][hapmap];0.80[TSI][hapmap];0.83[EUR][1000 genomes]
rs10899792	0.95[ASN][1000 genomes]
rs10899798	0.83[EUR][1000 genomes]
rs10899799	0.83[EUR][1000 genomes]
rs11238522	0.94[ASN][1000 genomes]
rs12221341	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[ASN][1000 genomes]
rs1416226	0.89[CEU][hapmap]
rs2066043	0.81[EUR][1000 genomes]
rs2066044	0.84[CEU][hapmap];0.93[GIH][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap]
rs2243492	0.95[CHB][hapmap];0.90[CHD][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs2245413	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2245710	0.95[ASN][1000 genomes]
rs2247860	0.81[EUR][1000 genomes]
rs2247979	0.83[GIH][hapmap]
rs2247981	0.83[GIH][hapmap]
rs2248335	0.89[CEU][hapmap]
rs2250444	0.83[GIH][hapmap]
rs2252744	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2252761	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs2252783	0.89[CEU][hapmap];0.93[GIH][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs2252785	0.89[CEU][hapmap];0.93[GIH][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs2253263	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2260200	0.84[CEU][hapmap];0.93[GIH][hapmap];0.86[TSI][hapmap]
rs2265886	0.84[CEU][hapmap];0.93[GIH][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap]
rs2492405	0.84[CEU][hapmap];0.93[GIH][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs2492408	0.81[EUR][1000 genomes]
rs2492411	0.81[EUR][1000 genomes]
rs2492412	0.81[EUR][1000 genomes]
rs2493648	0.84[CEU][hapmap];0.93[GIH][hapmap];0.86[TSI][hapmap]
rs2493661	0.86[ASN][1000 genomes]
rs2999276	0.83[EUR][1000 genomes]
rs3000708	0.96[ASN][1000 genomes]
rs4245604	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4597022	0.89[CEU][hapmap];0.93[GIH][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs4627023	0.82[ASN][1000 genomes]
rs60789236	0.94[ASN][1000 genomes]
rs7069214	0.81[EUR][1000 genomes]
rs7092599	0.81[EUR][1000 genomes]
rs7894374	0.83[EUR][1000 genomes]
rs7912358	0.94[ASN][1000 genomes]
rs7914140	0.83[CEU][hapmap]
rs9422371	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv1043661	chr10:43626619-43890162	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv540574	chr10:43626619-43890162	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv1035873	chr10:43721143-43873664	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv831842	chr10:43846541-43987501	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
7	nsv521283	chr10:43866528-43871998	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43858600-43891000	Weak transcription	Right Atrium	heart
2	chr10:43861200-43872400	Weak transcription	Fetal Intestine Small	intestine
3	chr10:43866400-43870400	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr10:43867200-43870200	Enhancers	Brain Cingulate Gyrus	brain
5	chr10:43867200-43876200	Weak transcription	Hela-S3	cervix
6	chr10:43868000-43869200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:43868000-43869600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:43868000-43870200	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr10:43868200-43869200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:43868200-43869200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr10:43868200-43869200	Enhancers	Left Ventricle	heart
12	chr10:43868200-43869200	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr10:43868200-43869400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr10:43868200-43869400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr10:43868200-43869600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr10:43868200-43870000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr10:43868200-43873400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:43868400-43869200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr10:43868400-43869200	Enhancers	Psoas Muscle	Psoas
20	chr10:43868400-43869600	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr10:43868400-43870400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr10:43868400-43871000	Enhancers	Brain Anterior Caudate	brain
23	chr10:43868600-43869400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:43868600-43872800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr10:43868800-43869200	Flanking Active TSS	Brain Substantia Nigra	brain
26	chr10:43868800-43869600	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr10:43868800-43870200	Weak transcription	Fetal Muscle Trunk	muscle
28	chr10:43868800-43870800	Weak transcription	Fetal Muscle Leg	muscle
29	chr10:43869000-43869600	Weak transcription	A549	lung
30	chr10:43869000-43870200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr10:43869000-43870400	Enhancers	Brain Angular Gyrus	brain
32	chr10:43869000-43871000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr10:43869000-43871200	Enhancers	Brain Hippocampus Middle	brain
34	chr10:43869000-43872200	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr10:43869000-43872800	Weak transcription	Gastric	stomach
36	chr10:43869000-43880400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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