Variant report

Variant	rs10900135
Chromosome Location	chr10:45446791-45446792
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:45444691..45447069-chr10:45452489..45454893,3	MCF-7	breast:
2	chr10:45440628..45443300-chr10:45445744..45447825,2	K562	blood:
3	chr10:45439710..45443300-chr10:45445744..45449321,3	K562	blood:
4	chr10:45445329..45447053-chr10:45471994..45473924,2	K562	blood:
5	chr10:45439564..45443140-chr10:45444900..45447735,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000107551	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11595747	0.83[EUR][1000 genomes]
rs11598392	0.80[CEU][hapmap]
rs2183993	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831845	chr10:45300268-45460395	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv466909	chr10:45408011-45446791	Enhancers Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv550714	chr10:45408011-45446791	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1035235	chr10:45442303-45467948	Genic enhancers Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45431200-45453200	Weak transcription	Gastric	stomach
2	chr10:45441200-45447200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr10:45441400-45447600	Enhancers	Fetal Intestine Small	intestine
4	chr10:45441400-45449200	Enhancers	Fetal Heart	heart
5	chr10:45442000-45451200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr10:45442400-45451000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr10:45442400-45453400	Weak transcription	Osteobl	bone
8	chr10:45442800-45446800	Enhancers	Left Ventricle	heart
9	chr10:45443000-45449200	Enhancers	Right Atrium	heart
10	chr10:45443200-45449600	Enhancers	Placenta	Placenta
11	chr10:45443400-45447200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr10:45443400-45454000	Weak transcription	Esophagus	oesophagus
13	chr10:45443800-45448000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr10:45443800-45449600	Enhancers	HSMMtube	muscle
15	chr10:45443800-45453000	Weak transcription	Lung	lung
16	chr10:45443800-45453200	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr10:45443800-45454000	Weak transcription	Psoas Muscle	Psoas
18	chr10:45444000-45448400	Weak transcription	Fetal Thymus	thymus
19	chr10:45444000-45449200	Enhancers	HepG2	liver
20	chr10:45444000-45451600	Weak transcription	Liver	Liver
21	chr10:45444200-45448400	Weak transcription	Primary T cells from cord blood	blood
22	chr10:45444400-45448400	Weak transcription	HSMM	muscle
23	chr10:45444400-45453600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr10:45444600-45448400	Weak transcription	Brain Anterior Caudate	brain
25	chr10:45445000-45448200	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr10:45445200-45448200	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr10:45445400-45447200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr10:45445400-45453000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr10:45445600-45449800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr10:45445600-45451000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr10:45445600-45452800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr10:45445800-45448200	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr10:45445800-45448200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr10:45445800-45448200	Weak transcription	Adipose Nuclei	Adipose
35	chr10:45445800-45451400	Weak transcription	Fetal Stomach	stomach
36	chr10:45445800-45453600	Weak transcription	Primary hematopoietic stem cells	blood
37	chr10:45446000-45447600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr10:45446000-45451000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr10:45446000-45453000	Weak transcription	Stomach Mucosa	stomach
40	chr10:45446000-45453600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr10:45446200-45446800	Weak transcription	Primary B cells from cord blood	blood
42	chr10:45446200-45449800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr10:45446200-45451000	Weak transcription	Stomach Smooth Muscle	stomach
44	chr10:45446200-45452400	Weak transcription	Pancreas	Pancrea
45	chr10:45446200-45453200	Weak transcription	Brain Substantia Nigra	brain
46	chr10:45446200-45453600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr10:45446400-45446800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr10:45446400-45447200	Weak transcription	Right Ventricle	heart
49	chr10:45446400-45448200	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr10:45446400-45448200	Weak transcription	Spleen	Spleen

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