Variant report

Variant	rs10900176
Chromosome Location	chr10:45678833-45678834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr10:45678662-45678990	K562	blood:	n/a	n/a
2	IRF1	chr10:45678626-45678935	K562	blood:	n/a	n/a
3	IRF1	chr10:45678743-45678890	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:45673165..45677202-chr10:45678075..45681365,4	K562	blood:
2	chr10:45673653..45675477-chr10:45677321..45679221,2	K562	blood:

Variant related genes	Relation type
ENSG00000227683	TF binding region
ENSG00000227683	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10430732	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10430733	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10458776	0.90[EUR][1000 genomes]
rs10458777	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10508892	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10732899	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10751379	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10793592	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10793593	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10793595	0.88[EUR][1000 genomes]
rs10793596	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10793598	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10793599	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10793600	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10793601	0.89[EUR][1000 genomes]
rs10793602	0.90[EUR][1000 genomes]
rs10793603	0.90[EUR][1000 genomes]
rs10900174	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10900175	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10900178	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10900179	0.90[EUR][1000 genomes]
rs10900182	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10900183	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11239374	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11239375	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11239387	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11239390	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12269344	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1856592	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2153331	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2275847	0.85[EUR][1000 genomes]
rs2282351	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2311316	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2311317	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3851263	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4948658	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4948953	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4948954	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4948955	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4948959	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4948961	0.87[EUR][1000 genomes]
rs4948962	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6593462	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6593463	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7074910	0.89[EUR][1000 genomes]
rs7079140	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7081346	0.88[EUR][1000 genomes]
rs7081946	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7094007	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7898356	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7910939	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7911066	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7917831	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7918108	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9326532	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv895104	chr10:45636867-45715369	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	nsv895105	chr10:45636867-45928822	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv895106	chr10:45659032-45715369	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv971918	chr10:45671966-45679201	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45676200-45679400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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