Variant report

Variant	rs2275847
Chromosome Location	chr10:45666965-45666966
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF22-2	chr10:45666872-45666992	NONHSAT013084

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10430732	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10430733	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs10458776	0.94[EUR][1000 genomes]
rs10458777	0.93[EUR][1000 genomes]
rs10508892	0.93[EUR][1000 genomes]
rs10732899	0.93[EUR][1000 genomes]
rs10751379	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10793592	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10793593	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10793595	0.92[EUR][1000 genomes]
rs10793596	0.93[EUR][1000 genomes]
rs10793598	0.93[EUR][1000 genomes]
rs10793599	0.93[EUR][1000 genomes]
rs10793600	0.91[EUR][1000 genomes]
rs10793601	0.94[EUR][1000 genomes]
rs10793602	0.94[EUR][1000 genomes]
rs10793603	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10900174	0.93[EUR][1000 genomes]
rs10900175	0.93[EUR][1000 genomes]
rs10900176	0.85[EUR][1000 genomes]
rs10900178	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10900179	0.94[EUR][1000 genomes]
rs10900182	0.93[EUR][1000 genomes]
rs10900183	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11239374	0.91[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11239375	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11239387	0.89[EUR][1000 genomes]
rs11239390	0.93[EUR][1000 genomes]
rs12269344	0.93[EUR][1000 genomes]
rs1856592	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2153331	0.93[EUR][1000 genomes]
rs2282351	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs2311316	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2311317	0.91[EUR][1000 genomes]
rs3851263	0.93[EUR][1000 genomes]
rs4948658	0.93[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs4948953	0.94[EUR][1000 genomes]
rs4948954	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4948955	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4948959	0.85[EUR][1000 genomes]
rs4948961	0.92[EUR][1000 genomes]
rs4948962	0.93[EUR][1000 genomes]
rs6593462	0.93[EUR][1000 genomes]
rs6593463	0.93[EUR][1000 genomes]
rs7074910	0.94[EUR][1000 genomes]
rs7079140	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7080443	0.80[CEU][hapmap]
rs7081346	0.93[EUR][1000 genomes]
rs7081946	0.93[EUR][1000 genomes]
rs7094007	0.83[EUR][1000 genomes]
rs7898356	0.84[EUR][1000 genomes]
rs7910939	0.92[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7911066	0.93[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7917831	0.93[EUR][1000 genomes]
rs7918108	0.93[EUR][1000 genomes]
rs9326532	0.91[AFR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831848	chr10:45490176-45667670	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	esv2750897	chr10:45550145-45820136	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv895104	chr10:45636867-45715369	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv895105	chr10:45636867-45928822	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv982848	chr10:45657182-45673875	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
6	nsv895106	chr10:45659032-45715369	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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