Variant report
| Variant | rs7080443 |
|---|---|
| Chromosome Location | chr10:45630913-45630914 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:45495745..45498371-chr10:45630285..45633118,2 | K562 | blood: |
(count:2 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-C10orf25-2 | chr10:45630723-45631088 | NONHSAT013061 |
| 2 | lnc-C10orf25-2 | chr10:45630882-45631073 | NONHSAT013080 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000165511 | Chromatin interaction |
| ENSG00000165512 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10751371 | 0.88[EUR][1000 genomes] |
| rs10751373 | 0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10793584 | 0.87[EUR][1000 genomes] |
| rs12413346 | 0.87[EUR][1000 genomes] |
| rs12414221 | 0.93[EUR][1000 genomes] |
| rs12415640 | 0.89[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs1856591 | 0.87[EUR][1000 genomes] |
| rs2153333 | 0.88[EUR][1000 genomes] |
| rs3862873 | 0.87[EUR][1000 genomes] |
| rs3862877 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3927771 | 0.87[EUR][1000 genomes] |
| rs4068923 | 0.85[EUR][1000 genomes] |
| rs4068926 | 0.87[EUR][1000 genomes] |
| rs4113135 | 0.92[EUR][1000 genomes] |
| rs4379782 | 0.86[EUR][1000 genomes] |
| rs4453185 | 0.80[EUR][1000 genomes] |
| rs4472887 | 0.84[EUR][1000 genomes] |
| rs4500437 | 0.87[EUR][1000 genomes] |
| rs4511242 | 0.85[EUR][1000 genomes] |
| rs4948657 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4948945 | 0.81[EUR][1000 genomes] |
| rs4948948 | 0.86[EUR][1000 genomes] |
| rs4948949 | 0.91[EUR][1000 genomes] |
| rs4948950 | 0.96[CEU][hapmap];0.97[YRI][hapmap] |
| rs6593460 | 0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7072352 | 0.96[CEU][hapmap] |
| rs7084047 | 0.96[CEU][hapmap];0.85[YRI][hapmap];0.92[EUR][1000 genomes] |
| rs7902898 | 0.92[EUR][1000 genomes] |
| rs7923293 | 0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831848 | chr10:45490176-45667670 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | esv2750897 | chr10:45550145-45820136 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 19 gene(s) | inside rSNPs | diseases |
| 3 | nsv947903 | chr10:45598715-45657182 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:45630600-45632000 | Enhancers | Fetal Kidney | kidney |
