Variant report

Variant	rs10903350
Chromosome Location	chr10:1066424-1066425
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:52)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:52 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr10:1066414-1067244	HepG2	liver:	n/a	n/a
2	BCL3	chr10:1066397-1066874	A549	lung:	n/a	n/a
3	POLR2A	chr10:1066342-1066814	GM12878	blood:	n/a	n/a
4	POLR2A	chr10:1066395-1067738	K562	blood:	n/a	n/a
5	POLR2A	chr10:1066270-1067309	GM12891	blood:	n/a	n/a
6	POLR2A	chr10:1066245-1067326	PANC-1	pancreas:	n/a	n/a
7	POLR2A	chr10:1066408-1066728	A549	lung:	n/a	n/a
8	POLR2A	chr10:1066354-1066831	HL-60	blood:	n/a	n/a
9	POLR2A	chr10:1066414-1067834	HepG2	liver:	n/a	n/a
10	BCLAF1	chr10:1066352-1066772	GM12878	blood:	n/a	n/a
11	POLR2A	chr10:1066366-1067374	SK-N-SH	brain:	n/a	n/a
12	POLR2A	chr10:1066373-1066806	GM12892	blood:	n/a	n/a
13	POLR2A	chr10:1066306-1066832	GM12892	blood:	n/a	n/a
14	POLR2A	chr10:1066366-1067610	HUVEC	blood vessel:	n/a	n/a
15	POLR2A	chr10:1066422-1067492	K562	blood:	n/a	n/a
16	POLR2A	chr10:1065029-1067893	Hela-S3	cervix:	n/a	n/a
17	POLR2A	chr10:1066383-1066769	H1-hESC	embryonic stem cell:	n/a	n/a
18	POLR2A	chr10:1066407-1067239	GM15510	blood:	n/a	n/a
19	BCLAF1	chr10:1066403-1066750	GM12878	blood:	n/a	n/a
20	POLR2A	chr10:1066242-1067268	GM12878	blood:	n/a	n/a
21	NFATC1	chr10:1066390-1066818	GM12878	blood:	n/a	n/a
22	POLR2A	chr10:1066313-1067208	PFSK-1	brain:	n/a	n/a
23	POLR2A	chr10:1064828-1067879	K562	blood:	n/a	n/a
24	POLR2A	chr10:1066397-1067807	GM12878	blood:	n/a	n/a
25	POLR2A	chr10:1066369-1066757	HCT-116	colon:	n/a	n/a
26	POLR2A	chr10:1066381-1067484	K562	blood:	n/a	n/a
27	POLR2A	chr10:1066346-1067246	K562	blood:	n/a	n/a
28	POLR2A	chr10:1066279-1067399	GM12892	blood:	n/a	n/a
29	POLR2A	chr10:1066416-1066792	HepG2	liver:	n/a	n/a
30	POLR2A	chr10:1066251-1067306	GM12891	blood:	n/a	n/a
31	POLR2A	chr10:1066291-1067431	PFSK-1	brain:	n/a	n/a
32	POLR2A	chr10:1066403-1066832	SK-N-SH	brain:	n/a	n/a
33	POLR2A	chr10:1066412-1066770	A549	lung:	n/a	n/a
34	POLR2A	chr10:1066321-1066753	PANC-1	pancreas:	n/a	n/a
35	POLR2A	chr10:1066396-1066805	GM12878	blood:	n/a	n/a
36	POLR2A	chr10:1066376-1066729	Hela-S3	cervix:	n/a	n/a
37	POLR2A	chr10:1066290-1066914	H1-hESC	embryonic stem cell:	n/a	n/a
38	POLR2A	chr10:1066355-1067562	MCF-7	breast:	n/a	n/a
39	POLR2A	chr10:1066381-1066793	A549	lung:	n/a	n/a
40	POLR2A	chr10:1066347-1066846	GM12891	blood:	n/a	n/a
41	POLR2A	chr10:1064920-1067522	K562	blood:	n/a	n/a
42	POLR2A	chr10:1066376-1066848	H1-hESC	embryonic stem cell:	n/a	n/a
43	POLR2A	chr10:1066348-1067280	GM19193	blood:	n/a	n/a
44	POLR2A	chr10:1066347-1067045	K562	blood:	n/a	n/a
45	MTA3	chr10:1066405-1067580	GM12878	blood:	n/a	n/a
46	POLR2A	chr10:1066344-1066809	Hela-S3	cervix:	n/a	n/a
47	POLR2A	chr10:1064790-1067937	A549	lung:	n/a	n/a
48	POLR2A	chr10:1066028-1067524	HepG2	liver:	n/a	n/a
49	POLR2A	chr10:1066303-1067238	GM12892	blood:	n/a	n/a
50	POLR2A	chr10:1066060-1067702	NB4	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:1057974..1060737-chr10:1065282..1067560,6	K562	blood:
2	chr10:1065509..1068424-chr10:1086745..1089649,3	K562	blood:
3	chr10:1066057..1068191-chr10:1094760..1097466,2	MCF-7	breast:
4	chr10:1066230..1068078-chr10:1069655..1072615,2	K562	blood:
5	chr10:1039567..1041272-chr10:1064973..1067031,2	K562	blood:

No data

Variant related genes	Relation type
IDI2-AS1	TF binding region
ENSG00000148377	Chromatin interaction
ENSG00000238924	Chromatin interaction
ENSG00000067064	Chromatin interaction
ENSG00000047056	Chromatin interaction
ENSG00000107937	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10903348	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10903351	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10903355	0.81[EUR][1000 genomes]
rs11250224	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1285	0.81[EUR][1000 genomes]
rs2170142	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2279257	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2306406	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7075695	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916591	chr10:224406-1088734	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv540386	chr10:224406-1197416	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1054659	chr10:611444-1133578	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
4	nsv466697	chr10:734229-1129527	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	nsv549765	chr10:734229-1129527	Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
6	nsv530116	chr10:776548-1401075	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
7	nsv1052540	chr10:887562-1300134	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv540407	chr10:887562-1300134	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	nsv533861	chr10:945438-1382068	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
10	nsv530117	chr10:945438-1729634	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
11	nsv540408	chr10:955835-1260680	Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
12	nsv817532	chr10:964660-1885945	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
13	nsv1050577	chr10:986723-1277854	Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
14	nsv540409	chr10:986723-1277854	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
15	nsv949405	chr10:1010464-1376105	Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
16	nsv1048254	chr10:1016006-1146595	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
17	nsv1040178	chr10:1024910-1126104	Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
18	nsv540410	chr10:1024910-1126104	Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
19	nsv894722	chr10:1058837-1274538	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
20	nsv1046220	chr10:1064024-1188998	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
21	nsv549767	chr10:1064940-1073684	Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:1035000-1094000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:1036000-1066800	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr10:1036800-1066800	Strong transcription	HUES48 Cell Line	embryonic stem cell
4	chr10:1036800-1066800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:1036800-1066800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:1037200-1066800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:1037200-1067200	Strong transcription	NHEK	skin
8	chr10:1038000-1067200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:1038200-1067000	Strong transcription	HSMM	muscle
10	chr10:1038200-1067200	Strong transcription	Muscle Satellite Cultured Cells	--
11	chr10:1038200-1067400	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr10:1038400-1066800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr10:1038400-1066800	Strong transcription	HMEC	breast
14	chr10:1038600-1066800	Strong transcription	Fetal Thymus	thymus
15	chr10:1038600-1066800	Strong transcription	Sigmoid Colon	Sigmoid Colon
16	chr10:1038600-1067000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr10:1038600-1067200	Strong transcription	Brain Inferior Temporal Lobe	brain
18	chr10:1038600-1068000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr10:1038800-1066600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
20	chr10:1038800-1067000	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr10:1038800-1067400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:1038800-1067800	Strong transcription	Skeletal Muscle Female	skeletal muscle
23	chr10:1041200-1067800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr10:1046800-1068600	Weak transcription	Right Atrium	heart
25	chr10:1047600-1067400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr10:1048200-1066800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr10:1048200-1066800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr10:1048600-1066800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr10:1048600-1067200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr10:1048800-1067200	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr10:1049000-1066600	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr10:1049000-1066800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:1049000-1066800	Strong transcription	Primary T cells from cord blood	blood
34	chr10:1049000-1066800	Strong transcription	Dnd41	blood
35	chr10:1049000-1067200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr10:1049200-1066600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:1049200-1066800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr10:1049200-1066800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr10:1049200-1066800	Strong transcription	Spleen	Spleen
40	chr10:1049200-1067000	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr10:1049200-1067200	Strong transcription	H9 Cell Line	embryonic stem cell
42	chr10:1049400-1066800	Strong transcription	Thymus	Thymus
43	chr10:1049400-1067200	Strong transcription	Gastric	stomach
44	chr10:1049400-1071200	Strong transcription	A549	lung
45	chr10:1049600-1066800	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr10:1049600-1067000	Strong transcription	Fetal Intestine Large	intestine
47	chr10:1049600-1067600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr10:1049600-1071600	Weak transcription	Fetal Heart	heart
49	chr10:1050000-1067400	Strong transcription	Fetal Brain Female	brain
50	chr10:1050200-1066800	Strong transcription	Fetal Muscle Trunk	muscle

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