Variant report

Variant	rs7075695
Chromosome Location	chr10:1081882-1081883
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:1080311..1084643-chr10:1093225..1095856,7	MCF-7	breast:
2	chr10:1033326..1035673-chr10:1079332..1082355,3	K562	blood:
3	chr10:1077434..1080726-chr10:1080852..1083466,3	MCF-7	breast:
4	chr10:1075654..1077725-chr10:1080611..1082815,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GTPBP4-1	chr10:1081754-1081916	ENSG00000232656.3

Variant related genes	Relation type
ENSG00000047056	Chromatin interaction
ENSG00000205740	Chromatin interaction
ENSG00000067064	Chromatin interaction
ENSG00000107937	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10903350	0.81[EUR][1000 genomes]
rs10903355	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10903357	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.90[GIH][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10903372	0.86[CHB][hapmap]
rs11250224	0.81[EUR][1000 genomes]
rs11250239	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11250250	0.95[CEU][hapmap];0.92[CHB][hapmap];0.89[CHD][hapmap];0.86[JPT][hapmap]
rs11250253	0.95[CEU][hapmap];0.93[CHB][hapmap];0.89[CHD][hapmap];0.86[JPT][hapmap]
rs11250254	0.94[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap]
rs11250263	0.88[CEU][hapmap];0.93[CHB][hapmap]
rs11250266	0.90[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap]
rs11253564	0.84[CEU][hapmap]
rs1285	0.85[CEU][hapmap];0.94[GIH][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2170142	0.83[CEU][hapmap]
rs2279257	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs2306403	0.83[EUR][1000 genomes]
rs2306404	0.84[CEU][hapmap];0.82[TSI][hapmap]
rs2306406	0.84[CEU][hapmap];0.82[TSI][hapmap]
rs2306408	0.84[CEU][hapmap];0.82[TSI][hapmap]
rs2387217	0.95[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.86[JPT][hapmap]
rs3765102	0.84[CEU][hapmap]
rs4880758	0.81[YRI][hapmap]
rs61830994	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6560711	0.90[CEU][hapmap];0.86[CHB][hapmap]
rs7071250	0.84[CEU][hapmap]
rs7074880	0.86[YRI][hapmap]
rs7094916	0.84[CEU][hapmap]
rs7101191	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7915650	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs7916430	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916591	chr10:224406-1088734	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv540386	chr10:224406-1197416	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1054659	chr10:611444-1133578	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
4	nsv466697	chr10:734229-1129527	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	nsv549765	chr10:734229-1129527	Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
6	nsv530116	chr10:776548-1401075	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
7	nsv1052540	chr10:887562-1300134	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv540407	chr10:887562-1300134	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	nsv533861	chr10:945438-1382068	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
10	nsv530117	chr10:945438-1729634	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
11	nsv540408	chr10:955835-1260680	Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
12	nsv817532	chr10:964660-1885945	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
13	nsv1050577	chr10:986723-1277854	Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
14	nsv540409	chr10:986723-1277854	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
15	nsv949405	chr10:1010464-1376105	Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
16	nsv1048254	chr10:1016006-1146595	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
17	nsv1040178	chr10:1024910-1126104	Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
18	nsv540410	chr10:1024910-1126104	Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
19	nsv894722	chr10:1058837-1274538	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
20	nsv1046220	chr10:1064024-1188998	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
21	nsv894723	chr10:1073684-1259485	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
22	nsv5532	chr10:1079499-1101700	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7075695	WDR37	cis	parietal	SCAN

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:1035000-1094000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:1060000-1091600	Weak transcription	Hela-S3	cervix
3	chr10:1063200-1092000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr10:1063600-1088200	Weak transcription	Fetal Brain Male	brain
5	chr10:1064000-1083000	Weak transcription	NHDF-Ad	bronchial
6	chr10:1064000-1084400	Weak transcription	Colonic Mucosa	Colon
7	chr10:1064000-1088400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr10:1064400-1082600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr10:1065200-1084800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr10:1065400-1082800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr10:1065600-1083800	Weak transcription	Fetal Lung	lung
12	chr10:1065600-1086000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr10:1065600-1086200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr10:1065800-1082600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr10:1065800-1086200	Weak transcription	Colon Smooth Muscle	Colon
16	chr10:1065800-1087800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr10:1066000-1082000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr10:1066000-1082400	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr10:1066000-1082600	Weak transcription	Aorta	Aorta
20	chr10:1066000-1083000	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr10:1066000-1086000	Weak transcription	HSMMtube	muscle
22	chr10:1066200-1082200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr10:1066200-1082200	Weak transcription	NH-A	brain
24	chr10:1066200-1082400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr10:1066200-1083200	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr10:1066200-1083400	Weak transcription	Liver	Liver
27	chr10:1066200-1085200	Weak transcription	HUVEC	blood vessel
28	chr10:1066200-1086000	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr10:1066200-1086200	Weak transcription	Fetal Kidney	kidney
30	chr10:1066600-1082400	Weak transcription	Primary B cells from cord blood	blood
31	chr10:1066600-1082800	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr10:1066600-1084000	Weak transcription	Placenta	Placenta
33	chr10:1066600-1088200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr10:1066800-1082200	Weak transcription	Primary T cells from cord blood	blood
35	chr10:1066800-1082400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr10:1066800-1082400	Weak transcription	Fetal Muscle Leg	muscle
37	chr10:1066800-1082400	Weak transcription	Lung	lung
38	chr10:1066800-1082600	Weak transcription	Spleen	Spleen
39	chr10:1066800-1083000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr10:1066800-1083000	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr10:1066800-1083000	Weak transcription	Thymus	Thymus
42	chr10:1066800-1083000	Weak transcription	Dnd41	blood
43	chr10:1066800-1083400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr10:1066800-1083800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr10:1066800-1083800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr10:1066800-1083800	Weak transcription	NHLF	lung
47	chr10:1066800-1084000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr10:1066800-1085000	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr10:1066800-1085200	Weak transcription	HUES48 Cell Line	embryonic stem cell
50	chr10:1066800-1085600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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