Variant report

Variant	rs7915650
Chromosome Location	chr10:1149390-1149391
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:1142128..1144717-chr10:1147647..1149769,2	K562	blood:
2	chr10:1143924..1146120-chr10:1147738..1149529,2	K562	blood:
3	chr10:1146983..1148667-chr10:1149207..1150735,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10795304	0.86[CEU][hapmap]
rs10795305	0.84[CEU][hapmap]
rs10903355	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs10903357	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs10903372	0.92[CHB][hapmap];0.83[JPT][hapmap]
rs10904593	0.84[CEU][hapmap]
rs11250239	0.86[CHB][hapmap];0.92[JPT][hapmap]
rs11250250	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11250253	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11250254	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes]
rs11250263	0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11250266	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11253516	0.84[CEU][hapmap]
rs11253527	0.84[CEU][hapmap]
rs11253542	0.84[CEU][hapmap]
rs11253543	0.84[CEU][hapmap]
rs11253564	0.89[CEU][hapmap]
rs2170142	0.88[CEU][hapmap]
rs2279257	0.89[CEU][hapmap]
rs2306404	0.89[CEU][hapmap]
rs2306406	0.89[CEU][hapmap]
rs2306408	0.89[CEU][hapmap]
rs2387217	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3765102	0.89[CEU][hapmap]
rs55886714	0.89[ASN][1000 genomes]
rs58551457	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6560711	0.85[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.80[EUR][1000 genomes]
rs68128658	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071250	0.89[CEU][hapmap]
rs7075695	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs7093767	0.83[CEU][hapmap]
rs7094916	0.89[CEU][hapmap]
rs7097976	0.84[CEU][hapmap]
rs7101191	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs72760942	0.86[ASN][1000 genomes]
rs7916430	0.92[CHB][hapmap];0.83[JPT][hapmap]
rs7917055	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv540386	chr10:224406-1197416	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv530116	chr10:776548-1401075	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv1052540	chr10:887562-1300134	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv540407	chr10:887562-1300134	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv533861	chr10:945438-1382068	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv530117	chr10:945438-1729634	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	nsv540408	chr10:955835-1260680	Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv817532	chr10:964660-1885945	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
9	nsv1050577	chr10:986723-1277854	Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
10	nsv540409	chr10:986723-1277854	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
11	nsv949405	chr10:1010464-1376105	Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
12	nsv894722	chr10:1058837-1274538	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
13	nsv1046220	chr10:1064024-1188998	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
14	nsv894723	chr10:1073684-1259485	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
15	nsv894725	chr10:1110464-1421516	Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
16	nsv1054432	chr10:1115626-1230431	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
17	nsv1041498	chr10:1117200-1760190	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:1117800-1168600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr10:1118000-1156400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:1118000-1168400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr10:1118000-1173800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:1121400-1154400	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr10:1122200-1168400	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr10:1122600-1168800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:1123000-1168600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:1123200-1155200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr10:1123200-1155800	Strong transcription	Dnd41	blood
11	chr10:1123200-1178400	Strong transcription	Liver	Liver
12	chr10:1123400-1155400	Strong transcription	Placenta	Placenta
13	chr10:1123400-1177800	Strong transcription	Primary B cells from peripheral blood	blood
14	chr10:1123800-1155600	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr10:1123800-1156000	Strong transcription	Primary T cells from cord blood	blood
16	chr10:1124200-1178000	Strong transcription	Primary B cells from cord blood	blood
17	chr10:1124400-1155800	Strong transcription	Primary T helper cells PMA-I stimulated	--
18	chr10:1127800-1153000	Strong transcription	Fetal Muscle Leg	muscle
19	chr10:1127800-1156200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:1127800-1179000	Strong transcription	Fetal Stomach	stomach
21	chr10:1128000-1155400	Strong transcription	Rectal Mucosa Donor 29	rectum
22	chr10:1128000-1155400	Strong transcription	Sigmoid Colon	Sigmoid Colon
23	chr10:1128000-1156400	Strong transcription	Fetal Intestine Small	intestine
24	chr10:1128200-1156200	Strong transcription	Fetal Intestine Large	intestine
25	chr10:1128200-1156400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr10:1129400-1179000	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr10:1130000-1155800	Strong transcription	NHEK	skin
28	chr10:1133000-1151200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr10:1133000-1155800	Weak transcription	A549	lung
30	chr10:1133200-1154400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr10:1136000-1156400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr10:1137200-1149400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:1138600-1155400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr10:1138600-1155800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr10:1138600-1162800	Strong transcription	Thymus	Thymus
36	chr10:1138600-1178600	Strong transcription	Adipose Nuclei	Adipose
37	chr10:1138800-1155400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr10:1138800-1159400	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr10:1139000-1155400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr10:1139200-1156400	Strong transcription	Fetal Muscle Trunk	muscle
41	chr10:1139200-1157200	Strong transcription	Fetal Brain Female	brain
42	chr10:1139400-1153200	Strong transcription	Duodenum Mucosa	Duodenum
43	chr10:1139600-1153200	Strong transcription	Rectal Mucosa Donor 31	rectum
44	chr10:1139600-1155200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr10:1139600-1155800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr10:1139600-1156000	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr10:1139600-1156000	Strong transcription	Spleen	Spleen
48	chr10:1139600-1156400	Strong transcription	Fetal Thymus	thymus
49	chr10:1139600-1160000	Strong transcription	Skeletal Muscle Female	skeletal muscle
50	chr10:1140400-1149600	Weak transcription	Psoas Muscle	Psoas

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