Variant report

Variant	rs6560711
Chromosome Location	chr10:1168563-1168564
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:1167955..1169648-chr10:1202872..1205288,2	K562	blood:
2	chr10:1153340..1156463-chr10:1165823..1169651,3	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10903355	0.90[CEU][hapmap];0.86[CHB][hapmap]
rs10903357	0.90[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap]
rs10903372	0.86[CHB][hapmap]
rs11250239	0.88[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap]
rs11250250	0.95[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes]
rs11250253	0.95[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes]
rs11250254	0.94[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap]
rs11250263	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.90[EUR][1000 genomes]
rs11250266	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1285	0.85[CEU][hapmap]
rs2387217	0.95[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap]
rs58551457	0.90[EUR][1000 genomes]
rs68128658	0.87[EUR][1000 genomes]
rs7075695	0.90[CEU][hapmap];0.86[CHB][hapmap]
rs7101191	0.90[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap]
rs7915650	0.85[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.80[EUR][1000 genomes]
rs7916430	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv540386	chr10:224406-1197416	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv530116	chr10:776548-1401075	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv1052540	chr10:887562-1300134	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv540407	chr10:887562-1300134	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv533861	chr10:945438-1382068	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv530117	chr10:945438-1729634	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	nsv540408	chr10:955835-1260680	Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv817532	chr10:964660-1885945	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
9	nsv1050577	chr10:986723-1277854	Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
10	nsv540409	chr10:986723-1277854	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
11	nsv949405	chr10:1010464-1376105	Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
12	nsv894722	chr10:1058837-1274538	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
13	nsv1046220	chr10:1064024-1188998	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
14	nsv894723	chr10:1073684-1259485	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
15	nsv894725	chr10:1110464-1421516	Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
16	nsv1054432	chr10:1115626-1230431	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
17	nsv1041498	chr10:1117200-1760190	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
18	nsv894726	chr10:1151620-1216861	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
19	nsv1052682	chr10:1162925-1675641	Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
20	nsv466699	chr10:1166400-1351088	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
21	nsv549768	chr10:1166400-1351088	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
22	nsv1043944	chr10:1168095-1626019	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
23	nsv540411	chr10:1168095-1626019	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
24	nsv894727	chr10:1168267-1224336	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6560711	WDR37	cis	parietal	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:1117800-1168600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr10:1118000-1173800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr10:1122600-1168800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr10:1123000-1168600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:1123200-1178400	Strong transcription	Liver	Liver
6	chr10:1123400-1177800	Strong transcription	Primary B cells from peripheral blood	blood
7	chr10:1124200-1178000	Strong transcription	Primary B cells from cord blood	blood
8	chr10:1127800-1179000	Strong transcription	Fetal Stomach	stomach
9	chr10:1129400-1179000	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr10:1138600-1178600	Strong transcription	Adipose Nuclei	Adipose
11	chr10:1144800-1232600	Weak transcription	Right Atrium	heart
12	chr10:1149200-1173200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:1149600-1173600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:1153200-1175000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr10:1154000-1177200	Weak transcription	Stomach Mucosa	stomach
16	chr10:1156200-1168600	Strong transcription	Aorta	Aorta
17	chr10:1156400-1177400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr10:1156600-1169200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:1156600-1169200	Strong transcription	GM12878-XiMat	blood
20	chr10:1156600-1171800	Strong transcription	Osteobl	bone
21	chr10:1156600-1179000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:1156800-1170000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr10:1156800-1177800	Strong transcription	Spleen	Spleen
24	chr10:1156800-1178800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr10:1156800-1179400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr10:1157000-1171800	Strong transcription	NHEK	skin
27	chr10:1157000-1172600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr10:1157000-1177000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr10:1157000-1177600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr10:1157000-1178600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:1157000-1178800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr10:1157400-1177800	Strong transcription	Duodenum Smooth Muscle	Duodenum
33	chr10:1157400-1177800	Strong transcription	Stomach Smooth Muscle	stomach
34	chr10:1157600-1169200	Weak transcription	K562	blood
35	chr10:1157800-1168800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr10:1157800-1178200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr10:1158000-1178000	Strong transcription	Lung	lung
38	chr10:1158200-1171800	Strong transcription	Fetal Lung	lung
39	chr10:1158400-1169200	Strong transcription	HMEC	breast
40	chr10:1158400-1178200	Strong transcription	Placenta	Placenta
41	chr10:1159000-1174600	Weak transcription	Psoas Muscle	Psoas
42	chr10:1159000-1176800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr10:1159200-1173200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr10:1159400-1171400	Strong transcription	Esophagus	oesophagus
45	chr10:1159400-1177800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr10:1159800-1168600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr10:1160200-1179000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr10:1160400-1168600	Strong transcription	Brain Germinal Matrix	brain
49	chr10:1160600-1168600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr10:1160800-1170800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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