Variant report

Variant	rs10904224
Chromosome Location	chr10:4337211-4337212
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10904223	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11252445	0.83[EUR][1000 genomes]
rs7097017	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9423525	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9423526	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894785	chr10:4306421-4372629	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4331200-4338200	Weak transcription	Brain Germinal Matrix	brain
2	chr10:4334600-4337400	Weak transcription	Fetal Brain Female	brain
3	chr10:4334800-4339400	Weak transcription	Aorta	Aorta
4	chr10:4334800-4342600	Weak transcription	Fetal Lung	lung
5	chr10:4334800-4349200	Weak transcription	Right Atrium	heart
6	chr10:4336200-4343000	Weak transcription	NHDF-Ad	bronchial
7	chr10:4336600-4338600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr10:4336800-4338800	Enhancers	Fetal Brain Male	brain
9	chr10:4337200-4337800	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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