Variant report

Variant	rs9423526
Chromosome Location	chr10:4334578-4334579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10904223	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10904224	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11252445	0.90[EUR][1000 genomes]
rs11252449	0.83[EUR][1000 genomes]
rs1923395	0.80[GIH][hapmap]
rs1923397	0.80[GIH][hapmap]
rs7097017	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7916188	0.84[EUR][1000 genomes]
rs7917410	0.85[AFR][1000 genomes]
rs9423525	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894785	chr10:4306421-4372629	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv518582	chr10:4328928-4336606	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4327000-4334600	Weak transcription	Right Atrium	heart
2	chr10:4331200-4338200	Weak transcription	Brain Germinal Matrix	brain
3	chr10:4333200-4334800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:4334200-4334600	Enhancers	Fetal Brain Female	brain
5	chr10:4334200-4334800	Enhancers	NHDF-Ad	bronchial
6	chr10:4334200-4335000	Enhancers	Fetal Muscle Leg	muscle
7	chr10:4334400-4334600	Enhancers	Fetal Brain Male	brain
8	chr10:4334400-4334800	Enhancers	Aorta	Aorta
9	chr10:4334400-4334800	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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