Variant report

Variant	rs1923397
Chromosome Location	chr10:4322833-4322834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:4170365..4172316-chr10:4322695..4325438,2	MCF-7	breast:
2	chr10:4232879..4234398-chr10:4321795..4324603,2	MCF-7	breast:
3	chr10:4311326..4314084-chr10:4320615..4323215,2	MCF-7	breast:
4	chr10:3824995..3829736-chr10:4319547..4324748,15	MCF-7	breast:
5	chr10:3735102..3736673-chr10:4321276..4322896,2	MCF-7	breast:
6	chr10:4320010..4324018-chr10:4702839..4706546,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1022768	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10795149	0.82[EUR][1000 genomes]
rs10795150	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10904220	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11252425	0.83[EUR][1000 genomes]
rs11252432	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11595086	0.82[EUR][1000 genomes]
rs12766787	0.91[CEU][hapmap];0.85[GIH][hapmap];0.87[TSI][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1570293	0.86[EUR][1000 genomes]
rs1923395	0.94[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1923396	0.91[CEU][hapmap];0.81[GIH][hapmap];0.84[TSI][hapmap];0.87[EUR][1000 genomes]
rs2181121	0.83[EUR][1000 genomes]
rs2397707	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4881310	0.86[EUR][1000 genomes]
rs4881311	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4881312	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs6601827	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6601828	0.84[EUR][1000 genomes]
rs6601829	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6601830	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7069957	0.84[EUR][1000 genomes]
rs7080263	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7089481	0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7097420	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7896160	0.87[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7898137	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7912330	0.83[EUR][1000 genomes]
rs7919377	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799113	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1800792	chr10:4259123-4332824	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1820112	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1822419	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1839293	chr10:4259123-4332824	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1841782	chr10:4259123-4332824	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2757363	chr10:4286880-4323493	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2759728	chr10:4286880-4323493	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv894785	chr10:4306421-4372629	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4309600-4323000	Weak transcription	Lung	lung
2	chr10:4309600-4324600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:4316200-4323000	Weak transcription	Gastric	stomach
4	chr10:4318800-4323000	Weak transcription	Psoas Muscle	Psoas
5	chr10:4319600-4327600	Enhancers	Fetal Lung	lung
6	chr10:4320400-4327800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr10:4320400-4327800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr10:4320800-4323200	Enhancers	Fetal Stomach	stomach
9	chr10:4320800-4326600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:4320800-4327400	Enhancers	Stomach Smooth Muscle	stomach
11	chr10:4321000-4323000	Enhancers	Fetal Muscle Leg	muscle
12	chr10:4321200-4323400	Enhancers	Spleen	Spleen
13	chr10:4321200-4325400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr10:4321200-4325600	Enhancers	Ovary	ovary
15	chr10:4321200-4326200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr10:4321200-4327600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:4321400-4323000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr10:4321400-4323800	Enhancers	Colon Smooth Muscle	Colon
19	chr10:4321400-4323800	Enhancers	Rectal Smooth Muscle	rectum
20	chr10:4321400-4324000	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr10:4321400-4324000	Enhancers	Osteobl	bone
22	chr10:4321400-4324400	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr10:4321400-4325000	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr10:4321400-4325400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr10:4321400-4327000	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr10:4321600-4323800	Enhancers	Adipose Nuclei	Adipose
27	chr10:4321600-4324000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr10:4321600-4324400	Enhancers	Hela-S3	cervix
29	chr10:4321600-4326200	Enhancers	NHDF-Ad	bronchial
30	chr10:4321600-4327800	Enhancers	NHLF	lung
31	chr10:4321800-4323000	Enhancers	Rectal Mucosa Donor 29	rectum
32	chr10:4322000-4323400	Enhancers	Duodenum Mucosa	Duodenum
33	chr10:4322000-4323400	Enhancers	Right Ventricle	heart
34	chr10:4322000-4323600	Enhancers	HSMM	muscle
35	chr10:4322000-4324400	Enhancers	NH-A	brain
36	chr10:4322000-4324600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr10:4322200-4323000	Weak transcription	Pancreas	Pancrea
38	chr10:4322200-4323200	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr10:4322200-4323800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr10:4322200-4324000	Enhancers	HUVEC	blood vessel
41	chr10:4322200-4325000	Weak transcription	HSMMtube	muscle
42	chr10:4322200-4326000	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr10:4322200-4326200	Weak transcription	Right Atrium	heart
44	chr10:4322400-4323400	Enhancers	A549	lung
45	chr10:4322400-4323800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr10:4322400-4324000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr10:4322400-4324200	Enhancers	Colonic Mucosa	Colon
48	chr10:4322400-4325000	Enhancers	Left Ventricle	heart
49	chr10:4322600-4323000	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr10:4322600-4324000	Enhancers	HMEC	breast

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