Variant report

Variant	rs1923395
Chromosome Location	chr10:4319640-4319641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:4311023..4313207-chr10:4318720..4320518,2	K562	blood:
2	chr10:4304386..4306768-chr10:4318241..4320361,3	MCF-7	breast:
3	chr10:3824995..3829736-chr10:4319547..4324748,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1022768	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10795150	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10904220	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11252425	0.80[EUR][1000 genomes]
rs11252432	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12766787	0.91[CEU][hapmap];0.85[GIH][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1570293	0.83[EUR][1000 genomes]
rs1923396	0.91[CEU][hapmap];0.81[GIH][hapmap];0.82[TSI][hapmap];0.84[EUR][1000 genomes]
rs1923397	0.94[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2181121	0.80[EUR][1000 genomes]
rs2397707	0.80[AMR][1000 genomes]
rs4881310	0.84[EUR][1000 genomes]
rs4881311	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4881312	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs6601827	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6601828	0.85[EUR][1000 genomes]
rs6601829	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6601830	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7069957	0.85[EUR][1000 genomes]
rs7080263	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7089481	0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7097420	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7896160	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7898137	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7912330	0.85[EUR][1000 genomes]
rs7919377	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799113	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1800792	chr10:4259123-4332824	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1820112	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1822419	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1839293	chr10:4259123-4332824	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1841782	chr10:4259123-4332824	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2757363	chr10:4286880-4323493	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2759728	chr10:4286880-4323493	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv894785	chr10:4306421-4372629	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4307800-4321400	Weak transcription	Pancreas	Pancrea
2	chr10:4309600-4323000	Weak transcription	Lung	lung
3	chr10:4309600-4324600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr10:4310000-4320800	Weak transcription	Fetal Heart	heart
5	chr10:4312800-4321600	Weak transcription	NHLF	lung
6	chr10:4313000-4322600	Weak transcription	HMEC	breast
7	chr10:4313600-4321000	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:4313600-4321400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:4314200-4321600	Weak transcription	Aorta	Aorta
10	chr10:4316200-4320800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr10:4316200-4323000	Weak transcription	Gastric	stomach
12	chr10:4318400-4321400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:4318800-4323000	Weak transcription	Psoas Muscle	Psoas
14	chr10:4319600-4321200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:4319600-4327600	Enhancers	Fetal Lung	lung

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