Variant report

Variant	rs7919377
Chromosome Location	chr10:4323100-4323101
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:4170365..4172316-chr10:4322695..4325438,2	MCF-7	breast:
2	chr10:4322899..4325604-chr10:4329174..4330972,3	MCF-7	breast:
3	chr10:4232879..4234398-chr10:4321795..4324603,2	MCF-7	breast:
4	chr10:4311326..4314084-chr10:4320615..4323215,2	MCF-7	breast:
5	chr10:3824995..3829736-chr10:4319547..4324748,15	MCF-7	breast:
6	chr10:4320010..4324018-chr10:4702839..4706546,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1022768	0.86[EUR][1000 genomes]
rs10795149	0.89[EUR][1000 genomes]
rs10795150	0.84[EUR][1000 genomes]
rs10904220	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10904222	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11252425	0.90[EUR][1000 genomes]
rs11252432	0.83[EUR][1000 genomes]
rs11252446	0.81[ASN][1000 genomes]
rs11595086	0.89[EUR][1000 genomes]
rs12766787	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1570293	0.92[EUR][1000 genomes]
rs1923395	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1923396	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1923397	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2181121	0.90[EUR][1000 genomes]
rs2397707	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2397708	0.83[EUR][1000 genomes]
rs4881310	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4881311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4881312	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6601827	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6601828	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6601829	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6601830	0.81[EUR][1000 genomes]
rs7069957	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7080263	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7089481	0.87[EUR][1000 genomes]
rs7097420	0.84[EUR][1000 genomes]
rs7896160	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7898137	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7912330	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs882601	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799113	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1800792	chr10:4259123-4332824	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1820112	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1822419	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1839293	chr10:4259123-4332824	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1841782	chr10:4259123-4332824	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2757363	chr10:4286880-4323493	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2759728	chr10:4286880-4323493	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv894785	chr10:4306421-4372629	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4309600-4324600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr10:4319600-4327600	Enhancers	Fetal Lung	lung
3	chr10:4320400-4327800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:4320400-4327800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:4320800-4323200	Enhancers	Fetal Stomach	stomach
6	chr10:4320800-4326600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:4320800-4327400	Enhancers	Stomach Smooth Muscle	stomach
8	chr10:4321200-4323400	Enhancers	Spleen	Spleen
9	chr10:4321200-4325400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:4321200-4325600	Enhancers	Ovary	ovary
11	chr10:4321200-4326200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:4321200-4327600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:4321400-4323800	Enhancers	Colon Smooth Muscle	Colon
14	chr10:4321400-4323800	Enhancers	Rectal Smooth Muscle	rectum
15	chr10:4321400-4324000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr10:4321400-4324000	Enhancers	Osteobl	bone
17	chr10:4321400-4324400	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr10:4321400-4325000	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr10:4321400-4325400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr10:4321400-4327000	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr10:4321600-4323800	Enhancers	Adipose Nuclei	Adipose
22	chr10:4321600-4324000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:4321600-4324400	Enhancers	Hela-S3	cervix
24	chr10:4321600-4326200	Enhancers	NHDF-Ad	bronchial
25	chr10:4321600-4327800	Enhancers	NHLF	lung
26	chr10:4322000-4323400	Enhancers	Duodenum Mucosa	Duodenum
27	chr10:4322000-4323400	Enhancers	Right Ventricle	heart
28	chr10:4322000-4323600	Enhancers	HSMM	muscle
29	chr10:4322000-4324400	Enhancers	NH-A	brain
30	chr10:4322000-4324600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:4322200-4323200	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr10:4322200-4323800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr10:4322200-4324000	Enhancers	HUVEC	blood vessel
34	chr10:4322200-4325000	Weak transcription	HSMMtube	muscle
35	chr10:4322200-4326000	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr10:4322200-4326200	Weak transcription	Right Atrium	heart
37	chr10:4322400-4323400	Enhancers	A549	lung
38	chr10:4322400-4323800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr10:4322400-4324000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr10:4322400-4324200	Enhancers	Colonic Mucosa	Colon
41	chr10:4322400-4325000	Enhancers	Left Ventricle	heart
42	chr10:4322600-4324000	Enhancers	HMEC	breast
43	chr10:4322600-4325600	Weak transcription	Fetal Heart	heart
44	chr10:4322800-4323800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr10:4322800-4323800	Enhancers	Aorta	Aorta
46	chr10:4322800-4324200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr10:4322800-4324200	Enhancers	Stomach Mucosa	stomach
48	chr10:4322800-4324200	Enhancers	NHEK	skin
49	chr10:4322800-4325200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr10:4323000-4323200	Enhancers	Duodenum Smooth Muscle	Duodenum

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