Variant report

Variant	rs7097420
Chromosome Location	chr10:4326506-4326507
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4324123..4326920-chr10:4330780..4332390,2	K562	blood:
2	chr10:4326364..4328633-chr10:4329094..4331140,3	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1022768	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10795150	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10904220	0.85[EUR][1000 genomes]
rs10904222	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11252432	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12766787	0.91[CEU][hapmap];0.85[GIH][hapmap];0.83[EUR][1000 genomes]
rs1570293	0.81[EUR][1000 genomes]
rs1923395	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1923396	0.91[CEU][hapmap];0.81[GIH][hapmap];0.82[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1923397	0.83[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4881310	0.87[EUR][1000 genomes]
rs4881311	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs4881312	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6601827	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6601828	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6601829	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6601830	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7069957	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7080263	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7089481	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7896160	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7898137	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7912330	0.88[EUR][1000 genomes]
rs7919377	0.84[EUR][1000 genomes]
rs882601	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799113	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1800792	chr10:4259123-4332824	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1820112	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1822419	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1839293	chr10:4259123-4332824	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1841782	chr10:4259123-4332824	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv894785	chr10:4306421-4372629	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4319600-4327600	Enhancers	Fetal Lung	lung
2	chr10:4320400-4327800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:4320400-4327800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:4320800-4326600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:4320800-4327400	Enhancers	Stomach Smooth Muscle	stomach
6	chr10:4321200-4327600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:4321400-4327000	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr10:4321600-4327800	Enhancers	NHLF	lung
9	chr10:4323400-4326800	Weak transcription	Esophagus	oesophagus
10	chr10:4323400-4327800	Enhancers	Fetal Muscle Leg	muscle
11	chr10:4323400-4331000	Weak transcription	Lung	lung
12	chr10:4323800-4326800	Weak transcription	Aorta	Aorta
13	chr10:4323800-4326800	Weak transcription	Small Intestine	intestine
14	chr10:4324200-4327200	Enhancers	Adipose Nuclei	Adipose
15	chr10:4324800-4327800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr10:4325000-4327000	Enhancers	HSMMtube	muscle
17	chr10:4325000-4329800	Weak transcription	Left Ventricle	heart
18	chr10:4325200-4326800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr10:4325200-4327000	Enhancers	Colon Smooth Muscle	Colon
20	chr10:4325400-4326600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr10:4325600-4327000	Enhancers	Muscle Satellite Cultured Cells	--
22	chr10:4325600-4327000	Enhancers	Fetal Kidney	kidney
23	chr10:4325600-4327000	Enhancers	Rectal Smooth Muscle	rectum
24	chr10:4325600-4327000	Enhancers	HSMM	muscle
25	chr10:4325800-4327000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr10:4325800-4327000	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr10:4326000-4326600	Enhancers	Fetal Muscle Trunk	muscle
28	chr10:4326000-4326600	Enhancers	Fetal Stomach	stomach
29	chr10:4326000-4326600	Enhancers	Psoas Muscle	Psoas
30	chr10:4326000-4326800	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr10:4326000-4327000	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr10:4326000-4327600	Enhancers	Ovary	ovary
33	chr10:4326000-4327600	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr10:4326200-4326600	Enhancers	Hela-S3	cervix
35	chr10:4326200-4326600	Flanking Active TSS	Osteobl	bone
36	chr10:4326200-4326800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr10:4326200-4327000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:4326200-4327000	Flanking Active TSS	Fetal Heart	heart
39	chr10:4326200-4327000	Enhancers	HMEC	breast
40	chr10:4326200-4327000	Flanking Active TSS	NHDF-Ad	bronchial
41	chr10:4326200-4327400	Enhancers	Right Ventricle	heart
42	chr10:4326200-4327600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr10:4326200-4327800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr10:4326200-4328200	Enhancers	Dnd41	blood
45	chr10:4326400-4326800	Weak transcription	Right Atrium	heart
46	chr10:4326400-4329800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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