Variant report

Variant	rs10904220
Chromosome Location	chr10:4308957-4308958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:3825342..3830573-chr10:4304925..4310190,7	MCF-7	breast:
2	chr10:3823986..3829739-chr10:4306109..4310504,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1022768	0.83[EUR][1000 genomes]
rs10795149	0.88[EUR][1000 genomes]
rs10795150	0.85[EUR][1000 genomes]
rs10904222	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11252425	0.89[EUR][1000 genomes]
rs11252432	0.85[EUR][1000 genomes]
rs11595086	0.87[EUR][1000 genomes]
rs12766787	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1570293	0.91[EUR][1000 genomes]
rs1923395	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1923396	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1923397	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2181121	0.89[EUR][1000 genomes]
rs2397707	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2397708	0.82[EUR][1000 genomes]
rs4881310	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4881311	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4881312	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6601827	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6601828	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6601829	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6601830	0.82[EUR][1000 genomes]
rs7069957	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7080263	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7089481	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7097420	0.85[EUR][1000 genomes]
rs7896160	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7898137	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7912330	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7919377	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs882601	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799113	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1800792	chr10:4259123-4332824	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1820112	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1822419	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1839293	chr10:4259123-4332824	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1841782	chr10:4259123-4332824	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1036103	chr10:4286880-4311792	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2757363	chr10:4286880-4323493	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv2759728	chr10:4286880-4323493	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3458618	chr10:4293384-4311663	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3458507	chr10:4293418-4311634	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3458730	chr10:4293489-4311565	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1037897	chr10:4294071-4311585	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv33732	chr10:4302983-4318917	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv437653	chr10:4304810-4314845	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv894785	chr10:4306421-4372629	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4301600-4316000	Weak transcription	Gastric	stomach
2	chr10:4303200-4309000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:4303200-4312200	Weak transcription	HUVEC	blood vessel
4	chr10:4303400-4312200	Weak transcription	NHEK	skin
5	chr10:4304000-4309000	Weak transcription	Colon Smooth Muscle	Colon
6	chr10:4305000-4309000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:4305600-4309800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr10:4306200-4313400	Weak transcription	Aorta	Aorta
9	chr10:4306400-4309000	Weak transcription	NHLF	lung
10	chr10:4306400-4312400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr10:4306600-4309000	Weak transcription	Colonic Mucosa	Colon
12	chr10:4306800-4309000	Weak transcription	Liver	Liver
13	chr10:4306800-4309000	Weak transcription	Lung	lung
14	chr10:4306800-4309000	Weak transcription	Ovary	ovary
15	chr10:4306800-4309000	Weak transcription	Right Atrium	heart
16	chr10:4306800-4312400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr10:4307000-4309000	Weak transcription	Right Ventricle	heart
18	chr10:4307000-4309400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr10:4307000-4311600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:4307200-4309000	Weak transcription	Left Ventricle	heart
21	chr10:4307200-4312200	Weak transcription	Hela-S3	cervix
22	chr10:4307400-4312200	Weak transcription	Placenta	Placenta
23	chr10:4307800-4309800	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr10:4307800-4321400	Weak transcription	Pancreas	Pancrea
25	chr10:4308000-4309000	Enhancers	Primary hematopoietic stem cells	blood
26	chr10:4308000-4309200	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr10:4308000-4309200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr10:4308000-4309600	Enhancers	Esophagus	oesophagus
29	chr10:4308000-4309800	Enhancers	Muscle Satellite Cultured Cells	--
30	chr10:4308000-4309800	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr10:4308200-4309600	Enhancers	Adipose Nuclei	Adipose
32	chr10:4308200-4309800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr10:4308200-4310000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr10:4308200-4310000	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr10:4308400-4309000	Weak transcription	Fetal Muscle Leg	muscle
36	chr10:4308400-4309200	Enhancers	Rectal Mucosa Donor 29	rectum
37	chr10:4308600-4309600	Enhancers	Brain Germinal Matrix	brain
38	chr10:4308600-4309600	Enhancers	Rectal Smooth Muscle	rectum
39	chr10:4308600-4309600	Enhancers	NHDF-Ad	bronchial
40	chr10:4308600-4310000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr10:4308800-4309200	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr10:4308800-4309200	Enhancers	Duodenum Mucosa	Duodenum
43	chr10:4308800-4309200	Enhancers	Fetal Brain Male	brain
44	chr10:4308800-4309200	Flanking Active TSS	Fetal Lung	lung
45	chr10:4308800-4309200	Enhancers	Psoas Muscle	Psoas
46	chr10:4308800-4309400	Enhancers	Fetal Heart	heart
47	chr10:4308800-4309600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr10:4308800-4309600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr10:4308800-4309600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr10:4308800-4309600	Enhancers	Cortex derived primary cultured neurospheres	brain

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