Variant report

Variant	rs4881312
Chromosome Location	chr10:4324136-4324137
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:4170365..4172316-chr10:4322695..4325438,2	MCF-7	breast:
2	chr10:4322899..4325604-chr10:4329174..4330972,3	MCF-7	breast:
3	chr10:4232879..4234398-chr10:4321795..4324603,2	MCF-7	breast:
4	chr10:4324123..4326920-chr10:4330780..4332390,2	K562	blood:
5	chr10:3824995..3829736-chr10:4319547..4324748,15	MCF-7	breast:
6	chr10:3827811..3830194-chr10:4323572..4325399,2	K562	blood:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1022768	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10795149	0.86[EUR][1000 genomes]
rs10795150	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10904220	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10904222	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11252425	0.86[EUR][1000 genomes]
rs11252432	0.87[EUR][1000 genomes]
rs11252446	0.81[ASN][1000 genomes]
rs11595086	0.85[EUR][1000 genomes]
rs12766787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1570293	0.89[EUR][1000 genomes]
rs1923395	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs1923396	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1923397	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs2065092	1.00[JPT][hapmap]
rs2181121	0.86[EUR][1000 genomes]
rs2397707	0.84[EUR][1000 genomes]
rs4881310	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4881311	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6601827	0.84[EUR][1000 genomes]
rs6601828	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6601829	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6601830	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7069957	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7080263	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7089481	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs7097420	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7896160	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7898137	0.84[EUR][1000 genomes]
rs7912330	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7919377	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs882601	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799113	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1800792	chr10:4259123-4332824	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1820112	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1822419	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1839293	chr10:4259123-4332824	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1841782	chr10:4259123-4332824	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv894785	chr10:4306421-4372629	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4309600-4324600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr10:4319600-4327600	Enhancers	Fetal Lung	lung
3	chr10:4320400-4327800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr10:4320400-4327800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:4320800-4326600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:4320800-4327400	Enhancers	Stomach Smooth Muscle	stomach
7	chr10:4321200-4325400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:4321200-4325600	Enhancers	Ovary	ovary
9	chr10:4321200-4326200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:4321200-4327600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr10:4321400-4324400	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr10:4321400-4325000	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr10:4321400-4325400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:4321400-4327000	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr10:4321600-4324400	Enhancers	Hela-S3	cervix
16	chr10:4321600-4326200	Enhancers	NHDF-Ad	bronchial
17	chr10:4321600-4327800	Enhancers	NHLF	lung
18	chr10:4322000-4324400	Enhancers	NH-A	brain
19	chr10:4322000-4324600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr10:4322200-4325000	Weak transcription	HSMMtube	muscle
21	chr10:4322200-4326000	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr10:4322200-4326200	Weak transcription	Right Atrium	heart
23	chr10:4322400-4324200	Enhancers	Colonic Mucosa	Colon
24	chr10:4322400-4325000	Enhancers	Left Ventricle	heart
25	chr10:4322600-4325600	Weak transcription	Fetal Heart	heart
26	chr10:4322800-4324200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr10:4322800-4324200	Enhancers	Stomach Mucosa	stomach
28	chr10:4322800-4324200	Enhancers	NHEK	skin
29	chr10:4322800-4325200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr10:4323000-4325000	Enhancers	Psoas Muscle	Psoas
31	chr10:4323000-4325800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr10:4323200-4325400	Weak transcription	Fetal Stomach	stomach
33	chr10:4323200-4326000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr10:4323400-4324200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
35	chr10:4323400-4324200	Enhancers	Muscle Satellite Cultured Cells	--
36	chr10:4323400-4324200	Enhancers	Rectal Mucosa Donor 29	rectum
37	chr10:4323400-4326200	Weak transcription	Right Ventricle	heart
38	chr10:4323400-4326800	Weak transcription	Esophagus	oesophagus
39	chr10:4323400-4327800	Enhancers	Fetal Muscle Leg	muscle
40	chr10:4323400-4331000	Weak transcription	Lung	lung
41	chr10:4323800-4324200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr10:4323800-4324200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr10:4323800-4324200	Weak transcription	Adipose Nuclei	Adipose
44	chr10:4323800-4324600	Weak transcription	Pancreas	Pancrea
45	chr10:4323800-4324800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr10:4323800-4325200	Weak transcription	Colon Smooth Muscle	Colon
47	chr10:4323800-4325600	Weak transcription	Rectal Smooth Muscle	rectum
48	chr10:4323800-4326800	Weak transcription	Aorta	Aorta
49	chr10:4323800-4326800	Weak transcription	Small Intestine	intestine
50	chr10:4324000-4324200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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