Variant report

Variant	rs12766787
Chromosome Location	chr10:4309859-4309860
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:3825342..3830573-chr10:4304925..4310190,7	MCF-7	breast:
2	chr10:3823986..3829739-chr10:4306109..4310504,8	MCF-7	breast:
3	chr10:3827486..3828068-chr10:4309220..4310177,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1022768	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs10795149	0.90[EUR][1000 genomes]
rs10795150	0.83[EUR][1000 genomes]
rs10904220	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10904222	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11252425	0.91[EUR][1000 genomes]
rs11252432	0.83[EUR][1000 genomes]
rs11595086	0.90[EUR][1000 genomes]
rs1570293	0.93[EUR][1000 genomes]
rs1923395	0.91[CEU][hapmap];0.85[GIH][hapmap];0.84[TSI][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1923396	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1923397	0.91[CEU][hapmap];0.85[GIH][hapmap];0.87[TSI][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2181121	0.91[EUR][1000 genomes]
rs2397707	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2397708	0.84[EUR][1000 genomes]
rs4881310	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4881311	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4881312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6601827	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6601828	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6601829	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6601830	0.80[EUR][1000 genomes]
rs7069957	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7080263	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7089481	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7097420	0.83[EUR][1000 genomes]
rs7896160	0.95[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7898137	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7912330	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7919377	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs882601	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799113	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1800792	chr10:4259123-4332824	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1820112	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1822419	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1839293	chr10:4259123-4332824	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1841782	chr10:4259123-4332824	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1036103	chr10:4286880-4311792	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2757363	chr10:4286880-4323493	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv2759728	chr10:4286880-4323493	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3458618	chr10:4293384-4311663	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3458507	chr10:4293418-4311634	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3458730	chr10:4293489-4311565	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1037897	chr10:4294071-4311585	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv33732	chr10:4302983-4318917	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv437653	chr10:4304810-4314845	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv894785	chr10:4306421-4372629	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4301600-4316000	Weak transcription	Gastric	stomach
2	chr10:4303200-4312200	Weak transcription	HUVEC	blood vessel
3	chr10:4303400-4312200	Weak transcription	NHEK	skin
4	chr10:4306200-4313400	Weak transcription	Aorta	Aorta
5	chr10:4306400-4312400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:4306800-4312400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:4307000-4311600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr10:4307200-4312200	Weak transcription	Hela-S3	cervix
9	chr10:4307400-4312200	Weak transcription	Placenta	Placenta
10	chr10:4307800-4321400	Weak transcription	Pancreas	Pancrea
11	chr10:4308200-4310000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr10:4308200-4310000	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr10:4308600-4310000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr10:4308800-4310000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:4308800-4310000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr10:4308800-4310000	Enhancers	Fetal Stomach	stomach
17	chr10:4309000-4310000	Enhancers	Colon Smooth Muscle	Colon
18	chr10:4309000-4310000	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr10:4309200-4310600	Enhancers	Fetal Lung	lung
20	chr10:4309200-4312200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr10:4309200-4312400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr10:4309200-4313200	Weak transcription	Fetal Brain Male	brain
23	chr10:4309600-4312200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:4309600-4312200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr10:4309600-4312200	Weak transcription	HMEC	breast
26	chr10:4309600-4312200	Weak transcription	NHDF-Ad	bronchial
27	chr10:4309600-4312200	Weak transcription	NHLF	lung
28	chr10:4309600-4312200	Weak transcription	Osteobl	bone
29	chr10:4309600-4312400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr10:4309600-4312400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr10:4309600-4312400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr10:4309600-4312400	Weak transcription	Adipose Nuclei	Adipose
33	chr10:4309600-4312400	Weak transcription	Fetal Muscle Leg	muscle
34	chr10:4309600-4312400	Weak transcription	Rectal Smooth Muscle	rectum
35	chr10:4309600-4312400	Weak transcription	Right Atrium	heart
36	chr10:4309600-4313400	Weak transcription	Ovary	ovary
37	chr10:4309600-4323000	Weak transcription	Lung	lung
38	chr10:4309600-4324600	Weak transcription	Fetal Muscle Trunk	muscle
39	chr10:4309800-4310000	Enhancers	Fetal Heart	heart
40	chr10:4309800-4310200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr10:4309800-4312200	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr10:4309800-4312200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:4309800-4312200	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr10:4309800-4312200	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr10:4309800-4312400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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