Variant report

Variant	rs11252449
Chromosome Location	chr10:4335890-4335891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10904223	0.83[EUR][1000 genomes]
rs11252446	0.82[ASN][1000 genomes]
rs11252451	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11252457	0.84[AMR][1000 genomes]
rs12766787	1.00[CHB][hapmap]
rs1923396	1.00[CHB][hapmap]
rs2182584	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4307624	0.83[AMR][1000 genomes]
rs4579834	0.84[AMR][1000 genomes]
rs4584477	0.85[AMR][1000 genomes]
rs4881311	1.00[CHB][hapmap]
rs4881312	1.00[CHB][hapmap]
rs4881314	0.85[AMR][1000 genomes]
rs7896160	1.00[CHB][hapmap]
rs9423525	0.82[EUR][1000 genomes]
rs9423526	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894785	chr10:4306421-4372629	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv518582	chr10:4328928-4336606	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4331200-4338200	Weak transcription	Brain Germinal Matrix	brain
2	chr10:4334600-4336800	Weak transcription	Fetal Brain Male	brain
3	chr10:4334600-4337400	Weak transcription	Fetal Brain Female	brain
4	chr10:4334800-4336000	Weak transcription	NHDF-Ad	bronchial
5	chr10:4334800-4339400	Weak transcription	Aorta	Aorta
6	chr10:4334800-4342600	Weak transcription	Fetal Lung	lung
7	chr10:4334800-4349200	Weak transcription	Right Atrium	heart
8	chr10:4335000-4337000	Weak transcription	Fetal Muscle Leg	muscle
9	chr10:4335600-4336400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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