Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10904225	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10904226	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10904227	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11252449	0.84[AMR][1000 genomes]
rs11252451	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11252458	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11252459	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12765847	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12769562	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12773994	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12777785	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2182584	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4307624	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4536111	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4579834	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4584477	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4881314	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4881316	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7093134	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7098895	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894785	chr10:4306421-4372629	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11252457	AKR1C4	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4345400-4352400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr10:4348200-4357200	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:4349400-4357800	Weak transcription	Ovary	ovary
4	chr10:4349400-4357800	Weak transcription	Psoas Muscle	Psoas
5	chr10:4349800-4353800	Enhancers	Fetal Heart	heart
6	chr10:4350400-4352400	Weak transcription	Brain Germinal Matrix	brain
7	chr10:4350400-4355600	Weak transcription	Fetal Brain Male	brain
8	chr10:4350400-4355800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:4350400-4357200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:4350600-4355200	Weak transcription	Fetal Lung	lung
11	chr10:4350800-4353400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:4350800-4358600	Weak transcription	Right Atrium	heart
13	chr10:4351600-4352400	Weak transcription	Skeletal Muscle Female	skeletal muscle

Quick Search: