Variant report

Variant	rs12773994
Chromosome Location	chr10:4358049-4358050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10904225	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10904226	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10904227	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11252451	0.85[AMR][1000 genomes]
rs11252457	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11252458	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11252459	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12765847	0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12769562	0.82[AMR][1000 genomes]
rs12777785	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1926786	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2182584	0.85[AMR][1000 genomes]
rs4307624	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4536111	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4579834	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4584477	0.90[AMR][1000 genomes]
rs4881314	0.90[AMR][1000 genomes]
rs4881316	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7093134	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894785	chr10:4306421-4372629	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4350800-4358600	Weak transcription	Right Atrium	heart
2	chr10:4353600-4358600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:4355800-4359800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:4357000-4360600	Enhancers	Fetal Lung	lung
5	chr10:4357200-4359000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:4357200-4359000	Enhancers	Fetal Muscle Leg	muscle
7	chr10:4357400-4358200	Enhancers	NHLF	lung
8	chr10:4357400-4358400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr10:4357400-4359000	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr10:4357400-4359200	Enhancers	Fetal Heart	heart
11	chr10:4357600-4358200	Enhancers	Brain Angular Gyrus	brain
12	chr10:4357600-4358400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:4357600-4358400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
14	chr10:4357600-4358400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr10:4357600-4358400	Enhancers	Brain Substantia Nigra	brain
16	chr10:4357600-4358400	Enhancers	HMEC	breast
17	chr10:4357600-4358400	Enhancers	HSMM	muscle
18	chr10:4357600-4358600	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr10:4357600-4358800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:4357600-4358800	Flanking Active TSS	Osteobl	bone
21	chr10:4357600-4359000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr10:4357600-4359000	Enhancers	Brain Germinal Matrix	brain
23	chr10:4357600-4359400	Enhancers	NH-A	brain
24	chr10:4357600-4359600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr10:4357800-4358200	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr10:4357800-4358200	Enhancers	HSMMtube	muscle
27	chr10:4357800-4358400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr10:4357800-4358400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr10:4357800-4358600	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr10:4357800-4358800	Enhancers	Aorta	Aorta
31	chr10:4357800-4358800	Enhancers	Ovary	ovary
32	chr10:4358000-4358200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:4358000-4358200	Enhancers	NHDF-Ad	bronchial
34	chr10:4358000-4358400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr10:4358000-4358400	Weak transcription	Psoas Muscle	Psoas
36	chr10:4358000-4358800	Active TSS	Brain Anterior Caudate	brain

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