Variant report

Variant	rs2182584
Chromosome Location	chr10:4342598-4342599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10904225	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10904226	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10904227	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11252449	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11252451	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252457	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11252458	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11252459	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12765847	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12769562	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12773994	0.85[AMR][1000 genomes]
rs12777785	0.83[AMR][1000 genomes]
rs4307624	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4536111	0.84[AMR][1000 genomes]
rs4579834	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4584477	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4881314	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4881316	0.85[AMR][1000 genomes]
rs7093134	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894785	chr10:4306421-4372629	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4334800-4342600	Weak transcription	Fetal Lung	lung
2	chr10:4334800-4349200	Weak transcription	Right Atrium	heart
3	chr10:4336200-4343000	Weak transcription	NHDF-Ad	bronchial
4	chr10:4337800-4345200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:4337800-4349200	Weak transcription	Fetal Heart	heart
6	chr10:4338800-4343600	Weak transcription	Fetal Brain Male	brain
7	chr10:4342200-4342800	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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