Variant report

Variant	rs12769562
Chromosome Location	chr10:4350678-4350679
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10904225	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10904226	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10904227	0.81[EUR][1000 genomes]
rs11252451	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11252457	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11252458	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11252459	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12765847	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12773994	0.82[AMR][1000 genomes]
rs12777785	0.80[AMR][1000 genomes]
rs2182584	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4307624	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4536111	0.81[AMR][1000 genomes]
rs4579834	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4584477	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4881314	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4881316	0.82[AMR][1000 genomes]
rs7093134	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894785	chr10:4306421-4372629	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4345400-4351400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr10:4345400-4352400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr10:4348000-4350800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr10:4348200-4357200	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:4349400-4357800	Weak transcription	Ovary	ovary
6	chr10:4349400-4357800	Weak transcription	Psoas Muscle	Psoas
7	chr10:4349800-4353800	Enhancers	Fetal Heart	heart
8	chr10:4350200-4350800	Enhancers	Right Atrium	heart
9	chr10:4350200-4351600	Enhancers	Left Ventricle	heart
10	chr10:4350400-4352400	Weak transcription	Brain Germinal Matrix	brain
11	chr10:4350400-4355600	Weak transcription	Fetal Brain Male	brain
12	chr10:4350400-4355800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr10:4350400-4357200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:4350600-4350800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr10:4350600-4355200	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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