Variant report

Variant	rs10910941
Chromosome Location	chr1:172001333-172001334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10489297	1.00[CHB][hapmap]
rs10910973	1.00[AFR][1000 genomes]
rs10910974	1.00[AFR][1000 genomes]
rs11584955	1.00[CHB][hapmap]
rs11589142	1.00[CHB][hapmap]
rs12059900	1.00[AMR][1000 genomes]
rs12060632	1.00[AMR][1000 genomes]
rs12062104	1.00[AMR][1000 genomes]
rs12067192	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12070381	1.00[AMR][1000 genomes]
rs12071915	1.00[AMR][1000 genomes]
rs12072055	1.00[AMR][1000 genomes]
rs12075392	1.00[AMR][1000 genomes]
rs12083356	1.00[AMR][1000 genomes]
rs12089487	1.00[AMR][1000 genomes]
rs12093037	1.00[AMR][1000 genomes]
rs12093751	1.00[AMR][1000 genomes]
rs12097783	1.00[AMR][1000 genomes]
rs12123334	1.00[CHB][hapmap]
rs12129264	1.00[CHB][hapmap]
rs13353039	1.00[AMR][1000 genomes]
rs16843624	1.00[AMR][1000 genomes]
rs16843855	1.00[CHB][hapmap]
rs16843860	1.00[CHB][hapmap]
rs17277008	1.00[CHB][hapmap]
rs17277127	1.00[CHB][hapmap]
rs17346438	1.00[CHB][hapmap]
rs17346452	1.00[CHB][hapmap]
rs17346473	1.00[CHB][hapmap]
rs17350544	1.00[CHB][hapmap]
rs17350579	1.00[CHB][hapmap]
rs17350586	1.00[CHB][hapmap]
rs17361789	1.00[CHB][hapmap]
rs17361920	1.00[CHB][hapmap]
rs2209096	1.00[CHB][hapmap]
rs2421990	1.00[CHB][hapmap]
rs2421991	1.00[CHB][hapmap]
rs4540689	1.00[CHB][hapmap]
rs593688	1.00[CHB][hapmap]
rs628479	1.00[CHB][hapmap]
rs6663676	1.00[AMR][1000 genomes]
rs6668588	1.00[AMR][1000 genomes]
rs6694089	1.00[CHB][hapmap]
rs7539162	1.00[AMR][1000 genomes]
rs9724787	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532342	chr1:171922237-172133785	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
2	nsv3532	chr1:171997451-172042351	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171994000-172020400	Weak transcription	Left Ventricle	heart
2	chr1:171994200-172002800	Weak transcription	Brain Anterior Caudate	brain
3	chr1:171994200-172009000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:171999000-172006800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr1:171999600-172002200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr1:171999600-172006800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr1:172000000-172001600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr1:172000000-172002200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr1:172000000-172012800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr1:172000400-172006800	Weak transcription	Brain Hippocampus Middle	brain
11	chr1:172000400-172009800	Weak transcription	Brain Angular Gyrus	brain
12	chr1:172000600-172007000	Weak transcription	Psoas Muscle	Psoas
13	chr1:172000600-172013600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr1:172000800-172011400	Weak transcription	Right Ventricle	heart
15	chr1:172000800-172013800	Weak transcription	Fetal Brain Female	brain
16	chr1:172001000-172006800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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