Variant report

Variant	rs12093037
Chromosome Location	chr1:171914541-171914542
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:171898943..171900631-chr1:171913961..171915684,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10910941	1.00[AMR][1000 genomes]
rs12059900	1.00[AMR][1000 genomes]
rs12060632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12062104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12067192	1.00[AMR][1000 genomes]
rs12070381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12071915	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12072055	1.00[AMR][1000 genomes]
rs12075392	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12083356	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12089487	1.00[AMR][1000 genomes]
rs12093751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12097783	1.00[AMR][1000 genomes]
rs13353039	1.00[AMR][1000 genomes]
rs16843624	1.00[AMR][1000 genomes]
rs6663676	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6668588	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7539162	1.00[AMR][1000 genomes]
rs9724787	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3512995	chr1:171329123-171994470	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv3512997	chr1:171329123-171994470	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv831893	chr1:171802450-171985000	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171900000-171916200	Weak transcription	Lung	lung
2	chr1:171906600-171923200	Weak transcription	Fetal Kidney	kidney
3	chr1:171907000-171923000	Weak transcription	Brain Angular Gyrus	brain
4	chr1:171907200-171917600	Weak transcription	Brain Substantia Nigra	brain
5	chr1:171909200-171917200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:171909400-171922400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr1:171909800-171914800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr1:171909800-171917600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:171909800-171923200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr1:171910600-171916200	Weak transcription	Stomach Mucosa	stomach
11	chr1:171912200-171918400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr1:171912800-171917200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr1:171912800-171917600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:171913000-171915000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr1:171913000-171915800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr1:171913000-171916000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr1:171913200-171915000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr1:171913400-171915000	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr1:171913800-171916800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr1:171913800-171918600	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links