Variant report

Variant	rs10911672
Chromosome Location	chr1:185024441-185024442
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:185022207..185024864-chr1:185045228..185048327,3	K562	blood:
2	chr1:185016719..185019700-chr1:185022718..185024922,3	MCF-7	breast:
3	chr1:185022755..185025260-chr1:185068870..185070441,2	K562	blood:
4	chr1:185002306..185004011-chr1:185022303..185025099,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12059402	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12062374	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12076847	1.00[AMR][1000 genomes]
rs12090423	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12093884	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55855715	1.00[AMR][1000 genomes]
rs74134431	1.00[AMR][1000 genomes]
rs74134432	1.00[AMR][1000 genomes]
rs74134441	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001323	chr1:184525419-185315876	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv535222	chr1:184525419-185315876	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv525731	chr1:184812165-185038104	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185015600-185034200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:185015600-185037000	Weak transcription	Spleen	Spleen
3	chr1:185015600-185037600	Weak transcription	Pancreas	Pancrea
4	chr1:185015800-185037600	Weak transcription	Aorta	Aorta
5	chr1:185015800-185043400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:185016000-185025600	Weak transcription	Ovary	ovary
7	chr1:185016000-185026600	Weak transcription	Psoas Muscle	Psoas
8	chr1:185016000-185026600	Weak transcription	Right Atrium	heart
9	chr1:185016000-185034400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr1:185016400-185030000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr1:185016400-185057000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:185016400-185067200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr1:185016400-185073800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr1:185016600-185026600	Weak transcription	Primary B cells from peripheral blood	blood
15	chr1:185016600-185026600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr1:185016600-185026800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr1:185016600-185057000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr1:185016800-185028600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr1:185017200-185027400	Weak transcription	Colon Smooth Muscle	Colon
20	chr1:185017200-185037400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:185017400-185026600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr1:185017400-185026600	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr1:185017400-185026600	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr1:185017400-185026800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr1:185017400-185027600	Weak transcription	Primary T cells from cord blood	blood
26	chr1:185017400-185028200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr1:185017400-185028200	Weak transcription	Small Intestine	intestine
28	chr1:185017400-185028400	Weak transcription	NH-A	brain
29	chr1:185017400-185029000	Weak transcription	K562	blood
30	chr1:185017400-185031000	Weak transcription	Stomach Mucosa	stomach
31	chr1:185017400-185037200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr1:185017400-185037400	Weak transcription	NHEK	skin
33	chr1:185017400-185042800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr1:185017600-185034200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr1:185017800-185026600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr1:185018000-185026600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr1:185018000-185026600	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr1:185018000-185026800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr1:185018000-185026800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr1:185018200-185026600	Weak transcription	Primary hematopoietic stem cells	blood
41	chr1:185018400-185043000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr1:185018400-185043200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr1:185018400-185101800	Weak transcription	Fetal Brain Male	brain
44	chr1:185019000-185034600	Weak transcription	Lung	lung
45	chr1:185019200-185028200	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr1:185019200-185037600	Weak transcription	Left Ventricle	heart
47	chr1:185020000-185028200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr1:185020200-185030800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr1:185020400-185026600	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr1:185020400-185026800	Weak transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links