Variant report

Variant	rs55855715
Chromosome Location	chr1:184875420-184875421
allele	-/CATG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:184873271..184876161-chr1:184885448..184888027,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10911672	1.00[AMR][1000 genomes]
rs12059402	1.00[AMR][1000 genomes]
rs12062374	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001323	chr1:184525419-185315876	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv535222	chr1:184525419-185315876	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv917126	chr1:184655366-184902273	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv525731	chr1:184812165-185038104	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv872585	chr1:184813885-184986725	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv872586	chr1:184814555-184948689	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
7	nsv872587	chr1:184820832-184986725	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184852800-184875800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:184863000-184905000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr1:184867600-184879400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:184868000-184875800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:184868400-184885600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr1:184868600-184881400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:184868600-184886200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr1:184871400-184875600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:184872600-184878000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:184874000-184875600	Enhancers	Primary T cells fromperipheralblood	blood
11	chr1:184874200-184875600	Enhancers	Left Ventricle	heart
12	chr1:184874200-184875800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr1:184874200-184880800	Enhancers	Fetal Heart	heart
14	chr1:184874200-184883400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr1:184874600-184876000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:184874800-184877200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr1:184874800-184879400	Weak transcription	Osteobl	bone
18	chr1:184874800-184880000	Weak transcription	Fetal Muscle Leg	muscle
19	chr1:184874800-184882000	Weak transcription	Pancreas	Pancrea
20	chr1:184874800-184888800	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr1:184875000-184877000	Weak transcription	Colon Smooth Muscle	Colon
22	chr1:184875000-184879200	Weak transcription	NHDF-Ad	bronchial
23	chr1:184875000-184879800	Weak transcription	Adipose Nuclei	Adipose
24	chr1:184875000-184879800	Weak transcription	Right Atrium	heart
25	chr1:184875000-184879800	Weak transcription	NHLF	lung
26	chr1:184875000-184884800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr1:184875000-184886000	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr1:184875200-184875600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr1:184875200-184877000	Weak transcription	Fetal Lung	lung
30	chr1:184875200-184877200	Weak transcription	Rectal Smooth Muscle	rectum
31	chr1:184875200-184885000	Weak transcription	GM12878-XiMat	blood
32	chr1:184875200-184888600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr1:184875400-184876400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr1:184875400-184877000	Weak transcription	Psoas Muscle	Psoas
35	chr1:184875400-184877000	Weak transcription	Right Ventricle	heart
36	chr1:184875400-184877200	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr1:184875400-184877400	Weak transcription	Fetal Brain Male	brain
38	chr1:184875400-184879200	Weak transcription	Aorta	Aorta
39	chr1:184875400-184879800	Weak transcription	Lung	lung
40	chr1:184875400-184880000	Weak transcription	Stomach Smooth Muscle	stomach

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