Variant report

Variant	rs10911974
Chromosome Location	chr1:172551724-172551725
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172500935..172503676-chr1:172549899..172554092,3	MCF-7	breast:
2	chr1:172540565..172542685-chr1:172550671..172552538,2	K562	blood:
3	chr1:172418505..172419330-chr1:172551492..172552290,2	MCF-7	breast:
4	chr1:172511443..172515146-chr1:172549683..172552996,3	K562	blood:
5	chr1:172528364..172530709-chr1:172549872..172552272,2	K562	blood:
6	chr1:172499192..172502524-chr1:172551121..172556401,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2021837	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872548	chr1:172518012-172551724	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172511800-172557800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:172514200-172558800	Weak transcription	Small Intestine	intestine
3	chr1:172519200-172559000	Weak transcription	Psoas Muscle	Psoas
4	chr1:172519400-172571600	Weak transcription	Brain Angular Gyrus	brain
5	chr1:172521800-172560400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:172527000-172558000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr1:172527800-172554600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr1:172534800-172558000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr1:172535200-172558000	Weak transcription	HSMMtube	muscle
10	chr1:172535400-172554200	Weak transcription	NHEK	skin
11	chr1:172535400-172558000	Weak transcription	Left Ventricle	heart
12	chr1:172535400-172558000	Weak transcription	Right Ventricle	heart
13	chr1:172535400-172558200	Weak transcription	Brain Substantia Nigra	brain
14	chr1:172535600-172558000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr1:172535600-172569200	Weak transcription	Gastric	stomach
16	chr1:172536000-172558000	Weak transcription	Fetal Stomach	stomach
17	chr1:172536000-172565400	Weak transcription	Ovary	ovary
18	chr1:172536000-172565600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:172536000-172566000	Weak transcription	Aorta	Aorta
20	chr1:172537400-172565600	Weak transcription	Lung	lung
21	chr1:172540200-172557400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr1:172540200-172558000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr1:172540200-172581000	Weak transcription	Colonic Mucosa	Colon
24	chr1:172540400-172554200	Weak transcription	HMEC	breast
25	chr1:172540400-172555000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr1:172540400-172557000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr1:172540400-172557800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr1:172540400-172557800	Weak transcription	Primary T cells from cord blood	blood
29	chr1:172540400-172557800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr1:172540400-172557800	Weak transcription	Thymus	Thymus
31	chr1:172540400-172557800	Weak transcription	GM12878-XiMat	blood
32	chr1:172540400-172558000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr1:172540400-172558000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr1:172540400-172558000	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr1:172540400-172558000	Weak transcription	Brain Hippocampus Middle	brain
36	chr1:172540400-172558000	Weak transcription	Fetal Brain Female	brain
37	chr1:172540400-172558000	Weak transcription	Fetal Kidney	kidney
38	chr1:172540400-172558000	Weak transcription	Fetal Muscle Leg	muscle
39	chr1:172540400-172558200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr1:172540400-172558400	Weak transcription	Brain Cingulate Gyrus	brain
41	chr1:172540400-172559600	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr1:172540400-172565600	Weak transcription	Esophagus	oesophagus
43	chr1:172540400-172565800	Weak transcription	Pancreas	Pancrea
44	chr1:172540600-172565400	Weak transcription	Fetal Intestine Small	intestine
45	chr1:172541000-172555400	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr1:172541000-172558000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr1:172541600-172565400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr1:172541800-172553200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr1:172542000-172559600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr1:172544400-172558000	Weak transcription	Placenta Amnion	Placenta Amnion

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