Variant report

Variant	rs2021837
Chromosome Location	chr1:172627586-172627587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr1:172627295-172627735	A549	lung:	n/a	chr1:172627494-172627503 chr1:172627493-172627504 chr1:172627494-172627503 chr1:172627494-172627503 chr1:172627492-172627505
2	CEBPB	chr1:172627343-172627646	A549	lung:	n/a	chr1:172627494-172627503 chr1:172627493-172627504 chr1:172627494-172627503 chr1:172627494-172627503 chr1:172627492-172627505
3	FOXA1	chr1:172627325-172627618	HepG2	liver:	n/a	n/a
4	FOXA1	chr1:172627355-172627651	T-47D	breast:	n/a	n/a
5	CEBPB	chr1:172627368-172627657	H1-hESC	embryonic stem cell:	n/a	chr1:172627494-172627503 chr1:172627493-172627504 chr1:172627494-172627503 chr1:172627494-172627503 chr1:172627492-172627505
6	FOXA1	chr1:172627202-172627609	HepG2	liver:	n/a	n/a
7	FOXA2	chr1:172627308-172627691	A549	lung:	n/a	n/a
8	CEBPB	chr1:172627330-172627680	HepG2	liver:	n/a	chr1:172627494-172627503 chr1:172627493-172627504 chr1:172627494-172627503 chr1:172627494-172627503 chr1:172627492-172627505
9	CEBPB	chr1:172627379-172627672	K562	blood:	n/a	chr1:172627494-172627503 chr1:172627493-172627504 chr1:172627494-172627503 chr1:172627494-172627503 chr1:172627492-172627505
10	CEBPB	chr1:172627323-172627685	Hela-S3	cervix:	n/a	chr1:172627494-172627503 chr1:172627493-172627504 chr1:172627494-172627503 chr1:172627494-172627503 chr1:172627492-172627505
11	CEBPB	chr1:172627327-172627678	IMR90	lung:	n/a	chr1:172627494-172627503 chr1:172627493-172627504 chr1:172627494-172627503 chr1:172627494-172627503 chr1:172627492-172627505
12	CEBPB	chr1:172627312-172627694	K562	blood:	n/a	chr1:172627494-172627503 chr1:172627493-172627504 chr1:172627494-172627503 chr1:172627494-172627503 chr1:172627492-172627505
13	CEBPB	chr1:172627377-172627640	ECC-1	luminal epithelium:	n/a	chr1:172627494-172627503 chr1:172627493-172627504 chr1:172627494-172627503 chr1:172627494-172627503 chr1:172627492-172627505
14	CEBPB	chr1:172627345-172627667	A549	lung:	n/a	chr1:172627494-172627503 chr1:172627493-172627504 chr1:172627494-172627503 chr1:172627494-172627503 chr1:172627492-172627505

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172626101..172627944-chr1:172628468..172631337,2	K562	blood:
2	chr1:172626517..172628084-chr1:172631691..172634350,2	K562	blood:

Variant related genes	Relation type
FASLG	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10911974	1.00[JPT][hapmap]
rs12085277	0.85[AFR][1000 genomes]
rs55674989	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs59727930	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs60162392	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs61756244	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6690331	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs74124371	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs74124379	1.00[AMR][1000 genomes]
rs9970950	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172623600-172628000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:172623800-172627600	Weak transcription	K562	blood
3	chr1:172624000-172631800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:172624200-172640600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr1:172624400-172631600	Weak transcription	NHEK	skin
6	chr1:172624400-172631800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:172624600-172631600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:172625000-172630200	Weak transcription	HMEC	breast
9	chr1:172626600-172628000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr1:172626800-172627800	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr1:172626800-172627800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr1:172626800-172628000	Enhancers	Primary T cells fromperipheralblood	blood
13	chr1:172626800-172628000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr1:172626800-172628200	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr1:172626800-172632800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr1:172627000-172628200	Weak transcription	Left Ventricle	heart
17	chr1:172627200-172627600	Enhancers	A549	lung
18	chr1:172627200-172628000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr1:172627200-172628000	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr1:172627200-172628000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr1:172627200-172631800	Enhancers	Primary T cells from cord blood	blood
22	chr1:172627400-172627800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr1:172627400-172627800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:172627400-172628000	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr1:172627400-172632400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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