Variant report

Variant	rs6690331
Chromosome Location	chr1:172636467-172636468
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12085277	0.82[AFR][1000 genomes]
rs2021837	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs55674989	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59727930	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60162392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61756244	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124371	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124379	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9970950	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172624200-172640600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:172628800-172639400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:172632000-172640400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:172633000-172639000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr1:172633200-172639200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr1:172633200-172640600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:172633800-172638400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr1:172633800-172638600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr1:172634200-172638400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr1:172634400-172639000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr1:172635600-172637800	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr1:172635600-172638000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr1:172635600-172639000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr1:172635600-172639600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr1:172635800-172637200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr1:172635800-172637600	Strong transcription	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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