Variant report

Variant	rs74124371
Chromosome Location	chr1:172628137-172628138
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EGR1	chr1:172627955-172628217	K562	blood:	n/a	chr1:172628121-172628136 chr1:172628123-172628134
2	EGR1	chr1:172627915-172628239	K562	blood:	n/a	chr1:172628121-172628136 chr1:172628123-172628134

Variant related genes	Relation type
FASLG	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2021837	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs55674989	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59727930	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60162392	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61756244	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6690331	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124379	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9970950	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172624000-172631800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:172624200-172640600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:172624400-172631600	Weak transcription	NHEK	skin
4	chr1:172624400-172631800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:172624600-172631600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:172625000-172630200	Weak transcription	HMEC	breast
7	chr1:172626800-172628200	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr1:172626800-172632800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr1:172627000-172628200	Weak transcription	Left Ventricle	heart
10	chr1:172627200-172631800	Enhancers	Primary T cells from cord blood	blood
11	chr1:172627400-172632400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:172627600-172628400	Enhancers	K562	blood
13	chr1:172627600-172628800	Enhancers	Fetal Thymus	thymus
14	chr1:172627800-172628400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
15	chr1:172627800-172628400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
16	chr1:172627800-172628400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:172627800-172628400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr1:172627800-172628800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr1:172627800-172631800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
20	chr1:172628000-172628400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr1:172628000-172628600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
22	chr1:172628000-172628800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
23	chr1:172628000-172628800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
24	chr1:172628000-172629000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
25	chr1:172628000-172629000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr1:172628000-172629400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
27	chr1:172628000-172629600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
28	chr1:172628000-172629800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
29	chr1:172628000-172631000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood

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