Variant report

Variant	rs61756244
Chromosome Location	chr1:172628488-172628489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172626101..172627944-chr1:172628468..172631337,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2021837	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs55674989	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59727930	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60162392	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6690331	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124371	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124379	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9970950	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172624000-172631800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:172624200-172640600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:172624400-172631600	Weak transcription	NHEK	skin
4	chr1:172624400-172631800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:172624600-172631600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:172625000-172630200	Weak transcription	HMEC	breast
7	chr1:172626800-172632800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr1:172627200-172631800	Enhancers	Primary T cells from cord blood	blood
9	chr1:172627400-172632400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:172627600-172628800	Enhancers	Fetal Thymus	thymus
11	chr1:172627800-172628800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr1:172627800-172631800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
13	chr1:172628000-172628600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
14	chr1:172628000-172628800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
15	chr1:172628000-172628800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
16	chr1:172628000-172629000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
17	chr1:172628000-172629000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr1:172628000-172629400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
19	chr1:172628000-172629600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
20	chr1:172628000-172629800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
21	chr1:172628000-172631000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
22	chr1:172628200-172628600	Active TSS	Primary T killer memory cells from peripheral blood	blood
23	chr1:172628200-172628600	Enhancers	Left Ventricle	heart
24	chr1:172628200-172628600	Active TSS	Lung	lung
25	chr1:172628200-172628600	Enhancers	Thymus	Thymus
26	chr1:172628200-172628800	Active TSS	Esophagus	oesophagus
27	chr1:172628200-172629800	Active TSS	Rectal Mucosa Donor 29	rectum
28	chr1:172628200-172630600	Active TSS	Duodenum Mucosa	Duodenum
29	chr1:172628400-172630200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
30	chr1:172628400-172630200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr1:172628400-172630600	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
32	chr1:172628400-172631600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr1:172628400-172631600	Weak transcription	K562	blood

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