Variant report

Variant	rs74124379
Chromosome Location	chr1:172647103-172647104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172631982..172633904-chr1:172646392..172648662,2	MCF-7	breast:
2	chr1:172639184..172641024-chr1:172645496..172648020,2	K562	blood:

rs_ID	r²[population]
rs2021837	1.00[AMR][1000 genomes]
rs55674989	0.87[AMR][1000 genomes]
rs59727930	0.87[AMR][1000 genomes]
rs60162392	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs61756244	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6690331	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs74124371	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9970950	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172640400-172647600	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr1:172641200-172652000	Weak transcription	Gastric	stomach
3	chr1:172641600-172649800	Weak transcription	HSMMtube	muscle
4	chr1:172644000-172647200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr1:172644800-172648400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:172645000-172648200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:172645000-172648200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:172645000-172648400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:172645000-172648400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr1:172645000-172648400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr1:172645000-172648400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:172645200-172648400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr1:172645200-172648400	Weak transcription	NHEK	skin
14	chr1:172645400-172648400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr1:172645600-172648200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr1:172645600-172648400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr1:172645600-172651600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr1:172645800-172648400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr1:172646000-172648600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr1:172646200-172647200	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr1:172646200-172648200	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr1:172646400-172648400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr1:172646400-172651600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr1:172646800-172647800	Weak transcription	Dnd41	blood
25	chr1:172646800-172648800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr1:172647000-172648200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr1:172647000-172648200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr1:172647000-172648400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr1:172647000-172649800	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr1:172647000-172649800	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr1:172647000-172649800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr1:172647000-172651600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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