Variant report

Variant	rs59727930
Chromosome Location	chr1:172639470-172639471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172639184..172641024-chr1:172645496..172648020,2	K562	blood:
2	chr1:172637748..172639981-chr1:172640756..172643256,3	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12085277	0.91[AFR][1000 genomes]
rs2021837	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs55674989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60162392	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61756244	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6690331	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124371	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124379	0.87[AMR][1000 genomes]
rs9970950	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172624200-172640600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:172632000-172640400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:172633200-172640600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:172635600-172639600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr1:172638600-172639600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
6	chr1:172639000-172641000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr1:172639000-172644200	Enhancers	Primary T cells from cord blood	blood
8	chr1:172639000-172645800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr1:172639200-172639800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
10	chr1:172639200-172640400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
11	chr1:172639200-172640800	Bivalent Enhancer	Fetal Thymus	thymus
12	chr1:172639200-172643000	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr1:172639200-172646200	Enhancers	Primary T cells fromperipheralblood	blood
14	chr1:172639200-172647000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr1:172639400-172639600	Flanking Active TSS	GM12878-XiMat	blood
16	chr1:172639400-172639600	Enhancers	HSMMtube	muscle
17	chr1:172639400-172639600	Enhancers	NHEK	skin
18	chr1:172639400-172639800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
19	chr1:172639400-172639800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
20	chr1:172639400-172639800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
21	chr1:172639400-172639800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
22	chr1:172639400-172639800	Flanking Active TSS	Dnd41	blood
23	chr1:172639400-172640400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr1:172639400-172640400	Bivalent Enhancer	Thymus	Thymus

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