Variant report

Variant	rs10913091
Chromosome Location	chr1:175849782-175849783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12117735	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12118970	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1361521	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16849285	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16849286	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.97[TSI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs478276	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs500894	0.89[EUR][1000 genomes]
rs524684	0.82[EUR][1000 genomes]
rs72711130	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72711137	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7517760	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33328	chr1:175446583-175910001	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv872560	chr1:175648631-175869554	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv522255	chr1:175827683-175849898	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175843000-175855000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:175845800-175850400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:175847600-175857000	Weak transcription	Fetal Lung	lung
4	chr1:175847800-175850800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:175848000-175850200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr1:175848000-175853400	Weak transcription	Lung	lung
7	chr1:175848200-175850000	Enhancers	Aorta	Aorta
8	chr1:175848200-175850400	Weak transcription	Brain Hippocampus Middle	brain
9	chr1:175848200-175850600	Weak transcription	Brain Anterior Caudate	brain
10	chr1:175848200-175850600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr1:175848200-175853400	Weak transcription	Brain Cingulate Gyrus	brain
12	chr1:175848200-175856800	Weak transcription	Adipose Nuclei	Adipose
13	chr1:175848400-175849800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:175848400-175850000	Weak transcription	Fetal Intestine Large	intestine
15	chr1:175848400-175850400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr1:175848400-175853600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr1:175848400-175862600	Weak transcription	Fetal Intestine Small	intestine
18	chr1:175848600-175850400	Weak transcription	Brain Angular Gyrus	brain
19	chr1:175848800-175853200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr1:175849200-175850200	Weak transcription	Brain Germinal Matrix	brain
21	chr1:175849200-175850400	Weak transcription	Brain Substantia Nigra	brain
22	chr1:175849400-175851200	Enhancers	Fetal Brain Female	brain
23	chr1:175849600-175851200	Enhancers	Fetal Brain Male	brain

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