Variant report

Variant	rs10913400
Chromosome Location	chr1:171622824-171622825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10913438	0.81[AFR][1000 genomes]
rs10913440	0.90[AFR][1000 genomes]
rs10913452	0.81[AFR][1000 genomes]
rs10913462	0.81[AFR][1000 genomes]
rs12082573	0.96[AFR][1000 genomes]
rs12086484	0.84[AFR][1000 genomes]
rs12086823	0.81[AFR][1000 genomes]
rs58055254	0.81[AFR][1000 genomes]
rs61730977	0.89[AFR][1000 genomes]
rs7525674	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv14617	chr1:171016086-171726961	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3512995	chr1:171329123-171994470	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	esv3512997	chr1:171329123-171994470	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv12447	chr1:171556291-171726822	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv872544	chr1:171616822-171654968	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171614600-171624600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:171615200-171623600	Weak transcription	Right Atrium	heart
3	chr1:171615400-171623000	Weak transcription	HSMM	muscle
4	chr1:171620000-171623400	Enhancers	Fetal Heart	heart
5	chr1:171620400-171627600	Enhancers	Fetal Muscle Leg	muscle
6	chr1:171621000-171624800	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr1:171621000-171625800	Enhancers	Fetal Stomach	stomach
8	chr1:171621400-171623400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:171621400-171623600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:171621400-171624200	Enhancers	Colon Smooth Muscle	Colon
11	chr1:171621400-171624600	Enhancers	Rectal Smooth Muscle	rectum
12	chr1:171621600-171623000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr1:171621600-171623200	Weak transcription	Adipose Nuclei	Adipose
14	chr1:171621600-171623200	Enhancers	Liver	Liver
15	chr1:171621600-171623600	Weak transcription	Left Ventricle	heart
16	chr1:171621800-171623600	Weak transcription	Colonic Mucosa	Colon
17	chr1:171621800-171623600	Weak transcription	Ovary	ovary
18	chr1:171621800-171624000	Weak transcription	Aorta	Aorta
19	chr1:171621800-171624000	Weak transcription	Lung	lung
20	chr1:171622000-171623600	Weak transcription	Placenta	Placenta
21	chr1:171622200-171623400	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr1:171622200-171625200	Enhancers	Fetal Lung	lung
23	chr1:171622400-171623200	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr1:171622400-171623200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr1:171622400-171623400	Enhancers	Stomach Smooth Muscle	stomach
26	chr1:171622400-171623600	Weak transcription	Psoas Muscle	Psoas
27	chr1:171622400-171623600	Weak transcription	Right Ventricle	heart
28	chr1:171622600-171623200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr1:171622800-171623000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr1:171622800-171623400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr1:171622800-171623600	Enhancers	HepG2	liver
32	chr1:171622800-171624800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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