Variant report

Variant	rs61730977
Chromosome Location	chr1:171621275-171621276
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10913400	0.89[AFR][1000 genomes]
rs10913440	0.86[AFR][1000 genomes]
rs12082573	0.93[AFR][1000 genomes]
rs12086484	0.81[AFR][1000 genomes]
rs7525674	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv14617	chr1:171016086-171726961	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv3512995	chr1:171329123-171994470	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	esv3512997	chr1:171329123-171994470	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv12447	chr1:171556291-171726822	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv872544	chr1:171616822-171654968	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171614600-171624600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:171615200-171623600	Weak transcription	Right Atrium	heart
3	chr1:171615400-171621600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr1:171615400-171622800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:171615400-171623000	Weak transcription	HSMM	muscle
6	chr1:171615600-171621600	Weak transcription	Liver	Liver
7	chr1:171616400-171621400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:171620000-171621600	Active TSS	Adipose Nuclei	Adipose
9	chr1:171620000-171623400	Enhancers	Fetal Heart	heart
10	chr1:171620400-171627600	Enhancers	Fetal Muscle Leg	muscle
11	chr1:171620800-171621400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:171620800-171622600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:171621000-171621400	Enhancers	Fetal Muscle Trunk	muscle
14	chr1:171621000-171621600	Enhancers	Left Ventricle	heart
15	chr1:171621000-171622400	Flanking Active TSS	Stomach Smooth Muscle	stomach
16	chr1:171621000-171624800	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr1:171621000-171625800	Enhancers	Fetal Stomach	stomach
18	chr1:171621200-171621400	Flanking Active TSS	Colon Smooth Muscle	Colon
19	chr1:171621200-171621800	Enhancers	Aorta	Aorta
20	chr1:171621200-171622400	Enhancers	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links