Variant report

Variant	rs10913689
Chromosome Location	chr1:179040930-179040931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:179002539..179004928-chr1:179039985..179042025,2	K562	blood:
2	chr1:178994812..178996811-chr1:179040582..179043210,2	MCF-7	breast:
3	chr1:178994514..178996787-chr1:179040850..179044332,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000116199	Chromatin interaction
ENSG00000232750	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10913673	0.91[CHB][hapmap];0.93[JPT][hapmap]
rs10913681	0.84[ASN][1000 genomes]
rs12733622	0.82[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap];0.84[YRI][hapmap];0.84[ASN][1000 genomes]
rs12735672	0.89[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs2025581	0.90[ASN][1000 genomes]
rs3766636	0.91[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs4651011	0.84[ASN][1000 genomes]
rs4652349	0.84[ASN][1000 genomes]
rs4652350	0.91[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs4652352	0.91[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs4652353	0.90[ASN][1000 genomes]
rs4652355	0.84[JPT][hapmap]
rs6425516	0.84[ASN][1000 genomes]
rs7517000	0.92[JPT][hapmap]
rs7517999	0.91[CHB][hapmap];0.93[JPT][hapmap];0.86[ASN][1000 genomes]
rs7526276	0.86[ASN][1000 genomes]
rs7541378	0.81[ASN][1000 genomes]
rs7541793	0.80[ASN][1000 genomes]
rs7548966	0.91[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs9729556	0.92[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10913689	FAM20B	cis	multi-tissue	Pritchard

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179008400-179041000	Weak transcription	Small Intestine	intestine
2	chr1:179008600-179049800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr1:179008600-179049800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr1:179009600-179050400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:179025000-179050200	Weak transcription	HUVEC	blood vessel
6	chr1:179025400-179050600	Weak transcription	Fetal Brain Male	brain
7	chr1:179025600-179050000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr1:179025600-179050400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr1:179025800-179050200	Weak transcription	Fetal Heart	heart
10	chr1:179027800-179042600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:179027800-179050600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr1:179028600-179050000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr1:179028600-179050600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr1:179029600-179043200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr1:179032600-179043200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:179032600-179043200	Strong transcription	Fetal Muscle Trunk	muscle
17	chr1:179032800-179041600	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr1:179032800-179043600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:179033000-179041800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr1:179033000-179043600	Strong transcription	Fetal Muscle Leg	muscle
21	chr1:179033800-179041000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr1:179033800-179041000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr1:179033800-179042800	Weak transcription	HMEC	breast
24	chr1:179033800-179050000	Weak transcription	Esophagus	oesophagus
25	chr1:179034000-179050000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr1:179034200-179050000	Weak transcription	Colonic Mucosa	Colon
27	chr1:179034200-179050000	Weak transcription	Fetal Kidney	kidney
28	chr1:179034800-179041000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr1:179035000-179042200	Weak transcription	Psoas Muscle	Psoas
30	chr1:179035200-179041000	Weak transcription	Gastric	stomach
31	chr1:179035200-179041000	Weak transcription	Pancreas	Pancrea
32	chr1:179035400-179050000	Weak transcription	Fetal Lung	lung
33	chr1:179035600-179041000	Weak transcription	NH-A	brain
34	chr1:179036000-179041000	Weak transcription	Primary B cells from cord blood	blood
35	chr1:179036000-179046800	Weak transcription	NHLF	lung
36	chr1:179036200-179041000	Weak transcription	Aorta	Aorta
37	chr1:179036200-179041000	Weak transcription	Brain Anterior Caudate	brain
38	chr1:179036200-179041000	Weak transcription	Brain Substantia Nigra	brain
39	chr1:179036200-179041000	Weak transcription	GM12878-XiMat	blood
40	chr1:179036200-179041200	Weak transcription	Brain Cingulate Gyrus	brain
41	chr1:179036200-179046400	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr1:179036200-179049200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr1:179036200-179050200	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr1:179036200-179050800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr1:179036400-179041000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr1:179036400-179041200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr1:179036400-179041800	Weak transcription	HSMMtube	muscle
48	chr1:179036400-179049200	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr1:179036400-179050000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr1:179036400-179050200	Weak transcription	Stomach Mucosa	stomach

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