The 2.0 version of rSNPBase

Variant report

Variant rs7541378
Chromosome Location chr1:179004658-179004659
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:111 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:178996200-179009200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:178996400-179006200 Weak transcription Fetal Stomach stomach
3 chr1:178996400-179011200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
4 chr1:178997000-179005800 Weak transcription Brain Substantia Nigra brain
5 chr1:178997800-179004800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
6 chr1:178998200-179004800 Enhancers Skeletal Muscle Male skeletal muscle
7 chr1:178998200-179004800 Enhancers Skeletal Muscle Female skeletal muscle
8 chr1:178998200-179008600 Enhancers Colon Smooth Muscle Colon
9 chr1:178998400-179027400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
10 chr1:178998600-179006000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
11 chr1:178998600-179007600 Weak transcription Brain Cingulate Gyrus brain
12 chr1:178998600-179008000 Weak transcription Placenta Placenta
13 chr1:178998800-179005800 Weak transcription Brain Angular Gyrus brain
14 chr1:178999000-179009600 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
15 chr1:179000000-179006200 Weak transcription Fetal Intestine Small intestine
16 chr1:179001000-179004800 Enhancers Psoas Muscle Psoas
17 chr1:179001200-179008600 Enhancers Primary B cells from peripheral blood blood
18 chr1:179001200-179009600 Enhancers Fetal Adrenal Gland Adrenal Gland
19 chr1:179001400-179007600 Weak transcription Fetal Brain Female brain
20 chr1:179001600-179017000 Weak transcription Pancreatic Islets Pancreatic Islet
21 chr1:179001800-179008600 Enhancers Primary T helper cells PMA-I stimulated --
22 chr1:179001800-179016200 Weak transcription Aorta Aorta
23 chr1:179002000-179019200 Weak transcription Adipose Nuclei Adipose
24 chr1:179002200-179005800 Weak transcription Breast Myoepithelial Primary Cells Breast
25 chr1:179002200-179007600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
26 chr1:179002800-179004800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
27 chr1:179002800-179005000 Enhancers Small Intestine intestine
28 chr1:179002800-179008600 Enhancers Primary T helper cells fromperipheralblood blood
29 chr1:179003000-179004800 Enhancers Duodenum Smooth Muscle Duodenum
30 chr1:179003000-179005200 Enhancers Primary Natural Killer cells fromperipheralblood blood
31 chr1:179003000-179005200 Enhancers Left Ventricle heart
32 chr1:179003200-179004800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
33 chr1:179003200-179004800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr1:179003200-179004800 Enhancers Primary B cells from cord blood blood
35 chr1:179003200-179004800 Enhancers Primary T cells from cord blood blood
36 chr1:179003200-179004800 Enhancers Primary hematopoietic stem cells blood
37 chr1:179003200-179004800 Enhancers Primary T helper naive cells from peripheral blood blood
38 chr1:179003200-179004800 Enhancers Primary T helper 17 cells PMA-I stimulated --
39 chr1:179003200-179004800 Enhancers Stomach Mucosa stomach
40 chr1:179003200-179004800 Enhancers Spleen Spleen
41 chr1:179003200-179004800 Enhancers NHLF lung
42 chr1:179003200-179005000 Enhancers Primary T killer naive cells fromperipheralblood blood
43 chr1:179003200-179005000 Enhancers Sigmoid Colon Sigmoid Colon
44 chr1:179003200-179005000 Genic enhancers K562 blood
45 chr1:179003200-179005200 Enhancers Primary T cells fromperipheralblood blood
46 chr1:179003200-179008600 Enhancers Primary T killer memory cells from peripheral blood blood
47 chr1:179003400-179007200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
48 chr1:179003600-179006000 Weak transcription Esophagus oesophagus
49 chr1:179003600-179007200 Weak transcription Ovary ovary
50 chr1:179003600-179009200 Weak transcription Right Ventricle heart

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Last update: Aug 31, 2015