Variant report

Variant	rs34636548
Chromosome Location	chr1:179007277-179007278
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr1:179006808-179007384	K562	blood:	n/a	n/a
2	MYC	chr1:179006930-179007283	K562	blood:	n/a	n/a
3	TEAD4	chr1:179006913-179007324	K562	blood:	n/a	n/a
4	CEBPB	chr1:179006955-179007903	IMR90	lung:	n/a	n/a
5	NR2F2	chr1:179006998-179007312	K562	blood:	n/a	n/a
6	RCOR1	chr1:179006969-179007292	K562	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:179006443..179009675-chr1:179013601..179018312,6	K562	blood:
2	chr1:179006443..179009828-chr1:179013760..179016314,4	K562	blood:
3	chr1:179006880..179009225-chr1:179012117..179015129,3	MCF-7	breast:
4	chr1:179006020..179008599-chr1:179014929..179016616,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000232750	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10913673	0.92[ASN][1000 genomes]
rs10913676	0.88[ASN][1000 genomes]
rs10913677	0.85[EUR][1000 genomes]
rs10913681	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12041914	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12064702	0.89[ASN][1000 genomes]
rs12567630	0.89[ASN][1000 genomes]
rs12568291	0.89[ASN][1000 genomes]
rs12735672	0.89[ASN][1000 genomes]
rs1408829	0.81[EUR][1000 genomes]
rs2025581	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2209453	0.89[ASN][1000 genomes]
rs2224962	0.91[ASN][1000 genomes]
rs2224963	0.89[ASN][1000 genomes]
rs3766636	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4651011	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4652346	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4652347	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4652349	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4652350	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4652352	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4652353	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6425514	0.84[EUR][1000 genomes]
rs6425516	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6425517	0.90[AFR][1000 genomes]
rs6699886	0.81[EUR][1000 genomes]
rs7517000	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7517999	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7520456	0.89[ASN][1000 genomes]
rs7526276	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7541378	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7541793	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7548966	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:178996200-179009200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:178996400-179011200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr1:178998200-179008600	Enhancers	Colon Smooth Muscle	Colon
4	chr1:178998400-179027400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:178998600-179007600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr1:178998600-179008000	Weak transcription	Placenta	Placenta
7	chr1:178999000-179009600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:179001200-179008600	Enhancers	Primary B cells from peripheral blood	blood
9	chr1:179001200-179009600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr1:179001400-179007600	Weak transcription	Fetal Brain Female	brain
11	chr1:179001600-179017000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr1:179001800-179008600	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr1:179001800-179016200	Weak transcription	Aorta	Aorta
14	chr1:179002000-179019200	Weak transcription	Adipose Nuclei	Adipose
15	chr1:179002200-179007600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr1:179002800-179008600	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr1:179003200-179008600	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr1:179003600-179009200	Weak transcription	Right Ventricle	heart
19	chr1:179003800-179011200	Weak transcription	Thymus	Thymus
20	chr1:179003800-179025800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr1:179004000-179007600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr1:179004000-179008000	Enhancers	NHDF-Ad	bronchial
23	chr1:179004000-179011000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr1:179004200-179007600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr1:179004200-179007600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr1:179004200-179007800	Weak transcription	Brain Anterior Caudate	brain
27	chr1:179004200-179009200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr1:179004200-179010800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr1:179004200-179024200	Weak transcription	Liver	Liver
30	chr1:179004400-179007400	Weak transcription	HepG2	liver
31	chr1:179004400-179007600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr1:179004400-179007600	Weak transcription	Fetal Heart	heart
33	chr1:179004400-179008200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr1:179004400-179012800	Weak transcription	Fetal Lung	lung
35	chr1:179004400-179013000	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr1:179004400-179019200	Weak transcription	Duodenum Mucosa	Duodenum
37	chr1:179004400-179024200	Weak transcription	Fetal Kidney	kidney
38	chr1:179004600-179007600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr1:179004600-179007600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr1:179004600-179007800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr1:179004600-179007800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr1:179004600-179007800	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr1:179004800-179007600	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr1:179004800-179011200	Weak transcription	Primary hematopoietic stem cells	blood
45	chr1:179004800-179012200	Weak transcription	Spleen	Spleen
46	chr1:179004800-179024600	Weak transcription	Primary B cells from cord blood	blood
47	chr1:179005000-179008000	Weak transcription	Small Intestine	intestine
48	chr1:179005000-179009000	Enhancers	K562	blood
49	chr1:179005200-179008000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
50	chr1:179005200-179008200	Weak transcription	Gastric	stomach

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