Variant report

Variant	rs4652346
Chromosome Location	chr1:178997159-178997160
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:178993182..178999783-chr1:179045102..179052535,14	MCF-7	breast:
2	chr1:178995068..178997335-chr1:179038354..179040451,4	K562	blood:
3	chr1:178925209..178926761-chr1:178997159..179000128,2	K562	blood:

Variant related genes	Relation type
ENSG00000186283	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10913673	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10913676	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10913681	0.94[ASN][1000 genomes]
rs12064702	0.85[ASN][1000 genomes]
rs12567630	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12568291	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12725164	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12735672	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2025581	0.89[ASN][1000 genomes]
rs2209453	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2224962	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2224963	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34636548	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3766636	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4651011	0.94[ASN][1000 genomes]
rs4652349	0.94[ASN][1000 genomes]
rs4652350	0.92[ASN][1000 genomes]
rs4652352	0.89[ASN][1000 genomes]
rs4652353	0.89[ASN][1000 genomes]
rs6425516	0.94[ASN][1000 genomes]
rs67498652	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7517999	0.92[ASN][1000 genomes]
rs7520456	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7526276	0.92[ASN][1000 genomes]
rs7541378	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7541793	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7548966	0.92[ASN][1000 genomes]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:178994600-178997200	Active TSS	GM12878-XiMat	blood
2	chr1:178996000-178997400	Flanking Active TSS	K562	blood
3	chr1:178996200-178997600	Weak transcription	Pancreas	Pancrea
4	chr1:178996200-178997600	Weak transcription	Spleen	Spleen
5	chr1:178996200-178997800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr1:178996200-178998200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr1:178996200-178998200	Weak transcription	Placenta	Placenta
8	chr1:178996200-179001200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr1:178996200-179003200	Weak transcription	Gastric	stomach
10	chr1:178996200-179009200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:178996400-178997200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr1:178996400-178997200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr1:178996400-178997200	Enhancers	Fetal Intestine Small	intestine
14	chr1:178996400-178997400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr1:178996400-178997400	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr1:178996400-178997800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr1:178996400-178998200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr1:178996400-178998200	Weak transcription	Small Intestine	intestine
19	chr1:178996400-178998800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr1:178996400-178998800	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr1:178996400-179000800	Enhancers	Primary T cells from cord blood	blood
22	chr1:178996400-179001400	Weak transcription	Aorta	Aorta
23	chr1:178996400-179001800	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr1:178996400-179003200	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr1:178996400-179003200	Weak transcription	Esophagus	oesophagus
26	chr1:178996400-179006200	Weak transcription	Fetal Stomach	stomach
27	chr1:178996400-179011200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr1:178996600-178997200	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr1:178996600-178997200	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr1:178996600-178997400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr1:178996600-178997600	Weak transcription	Ovary	ovary
32	chr1:178996600-178997800	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr1:178996600-178998400	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr1:178996600-178999000	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr1:178996600-179001000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr1:178996600-179004000	Weak transcription	Fetal Kidney	kidney
37	chr1:178996800-178997200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr1:178996800-178997400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr1:178996800-178997400	Enhancers	Duodenum Mucosa	Duodenum
40	chr1:178996800-178997600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr1:178996800-178997600	Weak transcription	Psoas Muscle	Psoas
42	chr1:178996800-178997800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr1:178996800-178997800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr1:178996800-178997800	Weak transcription	Primary B cells from peripheral blood	blood
45	chr1:178996800-178997800	Weak transcription	Brain Hippocampus Middle	brain
46	chr1:178996800-178998000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr1:178996800-178998000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr1:178996800-178998000	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr1:178996800-178998000	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr1:178996800-178998000	Weak transcription	Stomach Smooth Muscle	stomach

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