Variant report

Variant	rs10913955
Chromosome Location	chr1:171878844-171878845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10913953	0.83[AFR][1000 genomes]
rs12065850	1.00[AFR][1000 genomes]
rs12065857	0.83[AFR][1000 genomes]
rs12073636	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3512995	chr1:171329123-171994470	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv3512997	chr1:171329123-171994470	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv831893	chr1:171802450-171985000	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171862200-171882600	Weak transcription	Aorta	Aorta
2	chr1:171868600-171880800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:171868800-171884000	Weak transcription	Fetal Lung	lung
4	chr1:171868800-171885000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr1:171869400-171879400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:171871200-171879000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr1:171872200-171883000	Weak transcription	Lung	lung
8	chr1:171872600-171879400	Weak transcription	NHEK	skin
9	chr1:171872600-171879600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:171874600-171879000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr1:171874600-171879600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:171876800-171879600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr1:171877800-171879800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr1:171878000-171880200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr1:171878000-171880200	Enhancers	Brain Cingulate Gyrus	brain
16	chr1:171878000-171880400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr1:171878000-171880400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:171878000-171881000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr1:171878000-171881000	Enhancers	HSMMtube	muscle
20	chr1:171878200-171880200	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr1:171878400-171879400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr1:171878600-171880000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr1:171878600-171880200	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr1:171878600-171880200	Enhancers	Brain Substantia Nigra	brain
25	chr1:171878600-171882600	Enhancers	Brain Hippocampus Middle	brain
26	chr1:171878800-171879200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chr1:171878800-171879800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
28	chr1:171878800-171879800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
29	chr1:171878800-171879800	Enhancers	Brain Angular Gyrus	brain
30	chr1:171878800-171879800	Enhancers	Brain Anterior Caudate	brain
31	chr1:171878800-171880000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
32	chr1:171878800-171880200	Enhancers	A549	lung

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