Variant report

Variant	rs12065857
Chromosome Location	chr1:171860417-171860418
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10913843	0.90[AFR][1000 genomes]
rs10913896	0.90[AFR][1000 genomes]
rs10913898	0.90[AFR][1000 genomes]
rs10913953	1.00[AFR][1000 genomes]
rs10913955	0.83[AFR][1000 genomes]
rs12059302	0.81[AFR][1000 genomes]
rs12065850	0.83[AFR][1000 genomes]
rs12073636	0.83[AFR][1000 genomes]
rs12087423	0.81[AFR][1000 genomes]
rs12089309	0.81[AFR][1000 genomes]
rs12093397	0.90[AFR][1000 genomes]
rs12093518	0.90[AFR][1000 genomes]
rs28411002	0.90[AFR][1000 genomes]
rs59481927	0.81[AFR][1000 genomes]
rs7527401	0.90[AFR][1000 genomes]
rs7554281	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3512995	chr1:171329123-171994470	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv3512997	chr1:171329123-171994470	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv831893	chr1:171802450-171985000	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:171854000-171866000	Weak transcription	Brain Anterior Caudate	brain
2	chr1:171857800-171862000	Weak transcription	Aorta	Aorta
3	chr1:171858000-171867200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:171858400-171868200	Weak transcription	Left Ventricle	heart
5	chr1:171859600-171860600	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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